View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13578_low_4 (Length: 318)
Name: NF13578_low_4
Description: NF13578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13578_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 8629077 - 8628760
Alignment:
| Q |
1 |
atgtggcaggaacgacgaagaagggaagaaggagaaggtggtgatgatggtcaaaagagacttttttcaacattgaaatgaagagagagaaaatattgaa |
100 |
Q |
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| T |
8629077 |
atgtggcaggaacgacgaagaagggaagaaggagaaggtggtgatgatggtcaaaagagacttttttcaacattgaaattaagagagagaaaatattgaa |
8628978 |
T |
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| Q |
101 |
agttaattaagaagaattaacaatgtctttgtttaatttatcattgtaattacgatgatgtttgtatttgtaataacaaaaactaaaacagaaatgggtt |
200 |
Q |
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| T |
8628977 |
agttaattaagaagaattaacaatgtctttgtttaatttatcattgtaattacgatgatgattgtatttgtaataacaaaaactaaaacagaaatgggtt |
8628878 |
T |
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| Q |
201 |
gccaaaatgatttaattagtgtgtaatatgtgnnnnnnnaattttcaaacttagttgtcatattctcctcatgttggttttaaggtaattacaaaaacaa |
300 |
Q |
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| T |
8628877 |
gccaaaatgatttaattagtgtgtaatatgtgtttttttaattttcaaacttagttgtcatattctcctcatgttggttttaaggtaattacaaaaacaa |
8628778 |
T |
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| Q |
301 |
agacaagtttgttatttt |
318 |
Q |
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|||||||||||||||||| |
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| T |
8628777 |
agacaagtttgttatttt |
8628760 |
T |
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