View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13579_low_1 (Length: 639)

Name: NF13579_low_1
Description: NF13579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13579_low_1
NF13579_low_1
[»] chr7 (3 HSPs)
chr7 (16-600)||(41874253-41874833)
chr7 (142-247)||(9555080-9555186)
chr7 (501-621)||(9554819-9554937)
[»] chr1 (5 HSPs)
chr1 (317-453)||(28561611-28561747)
chr1 (128-301)||(33008437-33008612)
chr1 (315-390)||(33008677-33008752)
chr1 (116-184)||(24056220-24056289)
chr1 (204-238)||(18474065-18474099)
[»] chr3 (3 HSPs)
chr3 (115-184)||(9104173-9104243)
chr3 (142-184)||(16972009-16972051)
chr3 (109-205)||(16475271-16475368)
[»] chr6 (2 HSPs)
chr6 (137-186)||(11166591-11166640)
chr6 (109-205)||(25005137-25005234)
[»] chr2 (3 HSPs)
chr2 (96-184)||(23828304-23828393)
chr2 (117-182)||(11387177-11387243)
chr2 (127-184)||(44788527-44788584)
[»] chr8 (2 HSPs)
chr8 (126-184)||(40841586-40841644)
chr8 (137-186)||(10250412-10250461)
[»] chr5 (1 HSPs)
chr5 (137-178)||(27026643-27026684)
[»] chr4 (1 HSPs)
chr4 (116-184)||(69251-69319)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 600
Target Start/End: Original strand, 41874253 - 41874833
Alignment:
Q  16 atatataaccctcttactgtacgtaatactgtccgtacaatcttcttccttgtaagatatttcgtgggaatttggaatttgctaggaaggagagtgttta 115  Q
    |||||||||||||||||||||    || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  41874253 atatataaccctcttactgta----attctgtccgtacaatcttcttccttgtaagatatttcgtgggaatttagaatttgctaggaaggaaagtgttta 41874348  T
Q  116 aggtaagagttttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaat 215  Q
     | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  41874349 ggataagagttttttctcattcgttcttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatcggttgaaaagaacaagaaaaacaac 41874448  T
Q  216 taaaatatatatttaagtggtaaagtttgaatttttatatttatatatgaaaacatgatttgaattgatgtgtgtaatgaaagttttggtttcttatatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  41874449 taaaatatatatttaagtggtaaagtttgaatttttatatttatatatgaaaacatgatttgaattgatgtgtgtaatgaaagttttggtttcttatttt 41874548  T
Q  316 gtgtgtaaatgatgatattaattctatgttatttgtgattatactttgaatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaatttt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41874549 gtgtgtaaatgatgatattaattctatgttatttgtgattatagtttgaatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaatttt 41874648  T
Q  416 gttcttgtatgtgggttttctctttgttttcctaagtgccgattattttatttgattgtgtttgcctaagtggcggaaattgtatttttactatcatcat 515  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||    
T  41874649 gttcttgtatgtgagttttctctttgttttcctaagtgccggttattttatttgattgtggttgcctaagtggcagaaattatatttttactatcatcat 41874748  T
Q  516 gcatttcctatgtgatgccttattggcggacaaatctcttttcatcattatgacatgacatgtgcatattttgtgtgatgcatgt 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41874749 gcatttcctatgtgatgccttattggcggacaaatctcttttcatcattatggcatgacatgtgcatattttgtgtgatgcatgt 41874833  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 9555186 - 9555080
Alignment:
Q  142 ttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaattaaaatatatatttaagtg-gtaaag 240  Q
    |||||||||| |||||   | ||||||||||||||| |||||| | ||| ||| ||||||| |||||||||||||||| ||||||||||||||  |||||    
T  9555186 ttactaagtgctaggactctcttatgaaatagtggttgaaattctaatcggttaaaaagaaaaagaaaaacaattaaattatatatttaagtgattaaag 9555087  T
Q  241 tttgaat 247  Q
    |||||||    
T  9555086 tttgaat 9555080  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 501 - 621
Target Start/End: Complemental strand, 9554937 - 9554819
Alignment:
Q  501 ttttactatcatcatgcatttcctatgtgatgccttattggcggacaaatctcttttcatcattatgacatgacatgtgcatattttgtgtgatgcatgt 600  Q
    ||||| |||||| |||||||| ||||| |||| |||  || |||  |||| |||||||||||| ||| ||||||||||| ||||| ||||||||||||||    
T  9554937 ttttattatcattatgcattttctatgcgatgtctttgtgacgggtaaatttcttttcatcatcatg-catgacatgtgtatattgtgtgtgatgcatgt 9554839  T
Q  601 gtctgcgggttaaatattatg 621  Q
    ||  |||||||||||||||||    
T  9554838 gt-ggcgggttaaatattatg 9554819  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 453
Target Start/End: Original strand, 28561611 - 28561747
Alignment:
Q  317 tgtgtaaatgatgatattaattctatgttatttgtgattatactttgaatttttattatgtctgaaagcaatgaaatgagttttgagaatgcaaattttg 416  Q
    |||||| ||||||| || ||||||||||||||| |||||| | |||||||| ||| ||||||||||||||| ||  || ||||||||||||||| || ||    
T  28561611 tgtgtacatgatgacataaattctatgttatttctgattaaattttgaattgttaatatgtctgaaagcaacgatgtgggttttgagaatgcaagttctg 28561710  T
Q  417 ttcttgtatgtgggttttctctttgttttcctaagtg 453  Q
    || |||||| | | ||| |||||||||| ||||||||    
T  28561711 ttattgtatattgatttactctttgtttgcctaagtg 28561747  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 301
Target Start/End: Original strand, 33008437 - 33008612
Alignment:
Q  128 tttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaagaaaaacaattaaaatatatat 227  Q
    |||| ||| |||| ||||||||||  |||| | ||||||||||| |||||||||||| | |||  || ||||||  |  ||| | |||||||||||||||    
T  33008437 tttcccatacgttcttactaagtgccaggaccatgttatgaaatggtggtagaaattctaatcgtttaaaaagagaagtaaatataattaaaatatatat 33008536  T
Q  228 ttaagtggtaaag-tttgaatttttata-tttatatatgaaaacatgatttgaattgatgtgtgtaatgaaagttt 301  Q
    | |||| |||||| ||||||||| || | |||||||||||  |||| ||||||| |||||||| ||||||| ||||    
T  33008537 taaagttgtaaagatttgaatttataaagtttatatatgaggacataatttgaagtgatgtgtataatgaatgttt 33008612  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 390
Target Start/End: Original strand, 33008677 - 33008752
Alignment:
Q  315 tgtgtgtaaatgatgatattaattctatgttatttgtgattatactttgaatttttattatgtctgaaagcaatga 390  Q
    |||||||| |||||||| | |||| |||||||||||||||||   ||||||| |||| |||||||||||| |||||    
T  33008677 tgtgtgtacatgatgatgtgaattttatgttatttgtgattaatgtttgaatctttaatatgtctgaaagtaatga 33008752  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 24056289 - 24056220
Alignment:
Q  116 aggtaagagttttttctc-attcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    |||||||||||||||||| || |||| ||||||| || ||||| | ||||| ||||||||||||||||||    
T  24056289 aggtaagagttttttctccatacgttcttactaaatgctaggaccttgttacgaaatagtggtagaaatt 24056220  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 204 - 238
Target Start/End: Complemental strand, 18474099 - 18474065
Alignment:
Q  204 aagaaaaacaattaaaatatatatttaagtggtaa 238  Q
    ||||||||||||||||||||||||||| |||||||    
T  18474099 aagaaaaacaattaaaatatatatttaggtggtaa 18474065  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 9104173 - 9104243
Alignment:
Q  115 aaggtaagagttttttctc-attcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    |||||||| |||||||| | || |||||||||||||||||||||  ||||||| |||||||||||| ||||    
T  9104173 aaggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaatt 9104243  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 16972009 - 16972051
Alignment:
Q  142 ttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    ||||||||||||||||  ||||||||||||||| |||||||||    
T  16972009 ttactaagtgttaggacggtgttatgaaatagtagtagaaatt 16972051  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 16475271 - 16475368
Alignment:
Q  109 gtgtttaaggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaa 205  Q
    |||||||||||||||||||||| | ||| |||| |||||||||  || |||  ||||||||| ||| |||||| ||| |  || ||||||||||||||    
T  16475271 gtgtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaa 16475368  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 11166640 - 11166591
Alignment:
Q  137 cgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatttt 186  Q
    |||| |||||||||||||||||| | |||||||||||||||||| |||||    
T  11166640 cgttcttactaagtgttaggatcttattatgaaatagtggtagagatttt 11166591  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 205
Target Start/End: Original strand, 25005137 - 25005234
Alignment:
Q  109 gtgtttaaggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaattttcatccgttgaaaagaacaa 205  Q
    |||||||||||||||||||||| | ||| |||| |||||||||  || |||  ||||||||| ||| |||||| ||| |  || ||||||||||||||    
T  25005137 gtgtttaaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaa 25005234  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 96 - 184
Target Start/End: Complemental strand, 23828393 - 23828304
Alignment:
Q  96 gctaggaaggagagtgtttaaggtaag-agttttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    ||||||||| | || || ||||||||| | ||||||| ||  |||| ||||||||||||||||   ||||||||||||||||||||||||    
T  23828393 gctaggaagtaaagcgtctaaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaatt 23828304  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 11387177 - 11387243
Alignment:
Q  117 ggtaagagtttttt-ctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaa 182  Q
    |||||||||||||| | ||| |||| ||||||| | |||||| |||||||||||||||| |||||||    
T  11387177 ggtaagagtttttttcccatacgttcttactaaatattaggaccgtgttatgaaatagtagtagaaa 11387243  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 184
Target Start/End: Original strand, 44788527 - 44788584
Alignment:
Q  127 ttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    ||||| ||| |||| ||||||||||||||||  ||||||| |||||||||||| ||||    
T  44788527 ttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagtaatt 44788584  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 40841644 - 40841586
Alignment:
Q  126 tttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    |||||| ||| |||| ||||||||||||||||  ||||||| |||||||||||| ||||    
T  40841644 tttttcccatacgttcttactaagtgttaggactgtgttattaaatagtggtagcaatt 40841586  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 10250412 - 10250461
Alignment:
Q  137 cgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatttt 186  Q
    |||| |||||||||||| ||| |||||| | |||||||||||||||||||    
T  10250412 cgttcttactaagtgttgggaccgtgttttaaaatagtggtagaaatttt 10250461  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 27026643 - 27026684
Alignment:
Q  137 cgtttttactaagtgttaggatcgtgttatgaaatagtggta 178  Q
    ||||||||||||||| |||||| ||||||| |||||||||||    
T  27026643 cgtttttactaagtgctaggattgtgttattaaatagtggta 27026684  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 184
Target Start/End: Original strand, 69251 - 69319
Alignment:
Q  116 aggtaagagttttttctcattcgtttttactaagtgttaggatcgtgttatgaaatagtggtagaaatt 184  Q
    ||||||| |||||||| ||| |||   |||||||||||||||  ||||||| |||||||||||| ||||    
T  69251 aggtaagggttttttcccatacgtccatactaagtgttaggactgtgttattaaatagtggtagcaatt 69319  T

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