View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13579_low_2 (Length: 419)
Name: NF13579_low_2
Description: NF13579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13579_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 373
Target Start/End: Original strand, 2151754 - 2152119
Alignment:
| Q |
18 |
attcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaactcnnnnnnn |
117 |
Q |
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| T |
2151754 |
attcttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttttcttaattggaatgggaactcaaaaaaa |
2151853 |
T |
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| Q |
118 |
-gttccgacgagtttccacaatgtctcttgtcacaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattt |
216 |
Q |
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| T |
2151854 |
agatccgacgagtttccacaatgtctcttgtcacacattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattt |
2151953 |
T |
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| Q |
217 |
tcaaggtagccattagatatgagagt---------ggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgta |
307 |
Q |
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| T |
2151954 |
tcaaggtagccattagatatgagagtggtgcttgaggtgtgaatcactaaattgaaatattgattgtcaactatgtgagataaaacaaaatctttgtgta |
2152053 |
T |
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| Q |
308 |
aagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattttttatatat |
373 |
Q |
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| T |
2152054 |
aagcaatgcctactctaatcatagtgttactcgtccctaatgtgttaatttggattatatatatat |
2152119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 2146348 - 2146433
Alignment:
| Q |
22 |
ttgcaaacaacttcaaatcctgggtacacacatcgatcactttgagcattgttaatttgattttcttctcttaattggaaagggaa |
107 |
Q |
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| T |
2146348 |
ttgcaaacaacttcaaagcctgggtacacacatcgatcactttgattattgctaatttgattttcttctcttaattggaaagggaa |
2146433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 149 - 238
Target Start/End: Original strand, 2142340 - 2142429
Alignment:
| Q |
149 |
acaaattggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatga |
238 |
Q |
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| T |
2142340 |
acaaattggagctctgcttcttgttgagtgaaaaagcaagaggactatggaaaatatgaaagaaattttcatggtagccattagatatga |
2142429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 2146513 - 2146599
Alignment:
| Q |
156 |
ggagctgtgctttttgttgagtgaaaaagcaagatcaatatgggaaatgagaaataaattttcaaggtagccattagatatgagagt |
242 |
Q |
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| T |
2146513 |
ggagttgtgctttttgttgagtgaaaaagcaagagaactatggaaaatatgaatgaaattctcaaggtagccattagtaatgagagt |
2146599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 2142231 - 2142267
Alignment:
| Q |
30 |
aacttcaaatcctgggtacacacatcgatcactttga |
66 |
Q |
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| T |
2142231 |
aacttcaaatcctgggtacccacatcgatcactttga |
2142267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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