View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13579_low_4 (Length: 347)
Name: NF13579_low_4
Description: NF13579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13579_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 47262301 - 47261959
Alignment:
| Q |
1 |
aagtttatgagtttttgtatcgggtcgaatagttatacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataata |
100 |
Q |
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| T |
47262301 |
aagtttatgagtttttgtatcgggtcgaatagttatacggattctgacccgtttgtttctgctttggagtttttgattcttggagattccttgtataata |
47262202 |
T |
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| Q |
101 |
ccactgattttaacaactttgctattggtttggttgctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262201 |
ccactgattttaacaactttgctattggtttggttgctagaaatagctttggttactccggaccaagcataaggttagttggacttggacactgttttct |
47262102 |
T |
|
| Q |
201 |
tcaacttttgtcaagttttgatgatattaatctttatttggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47262101 |
tcaacttttgtcaagttttgatgatattaatctttatttggttggtacttggtagatatatagaatatagatcattatcatttagttgtggttatactgt |
47262002 |
T |
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| Q |
301 |
atctgtaaaatttcctaagtttttgttgtcctatcctttgcta |
343 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
47262001 |
atctgtaaaatttcctaagtttttgttgtcctatcctatgcta |
47261959 |
T |
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