View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_high_15 (Length: 259)
Name: NF1357_high_15
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 30 - 248
Target Start/End: Original strand, 8822199 - 8822417
Alignment:
| Q |
30 |
caaagaaccctaccacggcatcttcaatacatggtccggcgaaaactgctgcgtaaactggtacggcgttagttgcgactccaccaccggccgtgtcacc |
129 |
Q |
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| T |
8822199 |
caaagaaccctaccacggcatcttcaatacatggtccggcgaaaactgctgcgtaaactggtacggcgttagttgcgactccaccaccggccgtgtcacc |
8822298 |
T |
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| Q |
130 |
gacatcaacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtccggttacatgactggaaaaatctcaccggagatttgcaaaattg |
229 |
Q |
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| T |
8822299 |
gacatcaacctccgtggcgagtcagaagatccaatcatctcaaaatccggcaagtctggttacatgaccggaaaaatctcaccggagatttgcaaaattg |
8822398 |
T |
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| Q |
230 |
acagcctcacttccttcat |
248 |
Q |
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| T |
8822399 |
acagcctcacttccttcat |
8822417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 165
Target Start/End: Complemental strand, 41998768 - 41998722
Alignment:
| Q |
119 |
gccgtgtcaccgacatcaacctccgtggcgagtcagaagatccaatc |
165 |
Q |
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| T |
41998768 |
gccgcgtcgccgatatcaacctccgcggcgagtcagaagatccaatc |
41998722 |
T |
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