View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1357_high_17 (Length: 251)

Name: NF1357_high_17
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1357_high_17
NF1357_high_17
[»] chr5 (4 HSPs)
chr5 (1-240)||(33826677-33826916)
chr5 (1-240)||(2416576-2416815)
chr5 (1-240)||(39878552-39878791)
chr5 (1-240)||(39348310-39348549)
[»] chr3 (2 HSPs)
chr3 (1-240)||(16652401-16652640)
chr3 (1-240)||(7604994-7605233)
[»] chr8 (1 HSPs)
chr8 (1-240)||(9061490-9061729)
[»] chr7 (2 HSPs)
chr7 (1-240)||(24773697-24773936)
chr7 (1-240)||(35349742-35349981)
[»] chr2 (2 HSPs)
chr2 (1-240)||(27313916-27314155)
chr2 (109-240)||(10788791-10788922)
[»] chr6 (2 HSPs)
chr6 (1-227)||(920727-920955)
chr6 (1-240)||(2276819-2277058)
[»] chr1 (4 HSPs)
chr1 (1-240)||(4014153-4014392)
chr1 (1-240)||(15197864-15198106)
chr1 (10-240)||(25880544-25880776)
chr1 (1-150)||(38443473-38443623)
[»] scaffold0531 (1 HSPs)
scaffold0531 (1-170)||(11202-11371)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 33826677 - 33826916
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33826677 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 33826776  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33826777 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 33826876  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  33826877 cagcactacacacaatccttgactacttctatcagttcat 33826916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2416576 - 2416815
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2416576 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 2416675  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2416676 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttaa 2416775  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  2416776 cagcactacacacaatccttgactacttctatcagttcat 2416815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39878791 - 39878552
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  39878791 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagactattattgatcataagataaagaaaaatga 39878692  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39878691 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttactctcaaggtataaactacatattttagccatacaaactctcaaatttag 39878592  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  39878591 cagcactacacacaatccttgactacttctatcaattcat 39878552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39348549 - 39348310
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  39348549 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagactattattgatcagaagataaagaaaaacga 39348450  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  39348449 tcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacatattttagccatacaaactctcaaatttag 39348350  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  39348349 cagcactacacacaatccttgactacttctatcagctcat 39348310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 16652640 - 16652401
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16652640 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 16652541  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16652540 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 16652441  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  16652440 cagcactacacacaatccttgactacttctatcagttcat 16652401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7604994 - 7605233
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  7604994 atttgaatcaaaacaaatactttagttacaaccaaacaaaatatttactaagatatttaagaaaaaagactattattgatcattagttaaagaaaaacga 7605093  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
T  7605094 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtatacactacatattttagccatacaaactctcaaatttaa 7605193  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  7605194 cagcactacacacaatccttgactacttctatcagttcat 7605233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 9061729 - 9061490
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9061729 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 9061630  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  9061629 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttaa 9061530  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  9061529 cagcactacacacaatccttgactacttctatcagttcat 9061490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 24773697 - 24773936
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24773697 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 24773796  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24773797 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 24773896  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    |||||||||||||||||| |||||||||| ||||||||||    
T  24773897 cagcactacacacaatccgtgactacttctatcagttcat 24773936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 35349981 - 35349742
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  35349981 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagactattattgatcagaagataaagaaaaacga 35349882  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  35349881 tcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacatattttagccatacaaactctcaaatttag 35349782  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  35349781 cagcactacacacaatccttgactacttctatcagctcat 35349742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 27313916 - 27314155
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27313916 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 27314015  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  27314016 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttaa 27314115  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  27314116 cagcactacacacaatccttgactacttctatcagttcat 27314155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 109 - 240
Target Start/End: Original strand, 10788791 - 10788922
Alignment:
Q  109 cactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttagcagcacta 208  Q
    |||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10788791 cactaaatttatttatattaagtacaattattctattttttattctcaaggtataaattacatattttagccatacaaactcttaaatttagcagcacta 10788890  T
Q  209 cacacaatccttgactacttccatcagttcat 240  Q
    |||||||||||| | |||||| |||| |||||    
T  10788891 cacacaatccttcattacttctatcaattcat 10788922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 920955 - 920727
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaa--gactattattgatcataagataaagaaaaac 98  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||    
T  920955 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaaaaaaaaaaagactattattgatcataagataaagaaaaac 920856  T
Q  99 gattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaattt 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  920855 gattgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaattt 920756  T
Q  199 agcagcactacacacaatccttgactact 227  Q
    |||||||||||||||||||||||||||||    
T  920755 agcagcactacacacaatccttgactact 920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 2277058 - 2276819
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  2277058 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagactattattgatcagaagataaagaaaaacga 2276959  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  2276958 tcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacatattttagccatacaaactctcaaatttag 2276859  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  2276858 cagcactacacacaatccttgactacttctatcagctcat 2276819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 4014392 - 4014153
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  4014392 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagagaaaagactattattgatcagaagataaagaaaaacga 4014293  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  4014292 tcgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaatgtataaattacatattttagccatacaaactctcaaatttag 4014193  T
Q  201 cagcactacacacaatccttgactacttccatcagttcat 240  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  4014192 cagcactacacacaatccttgactacttctatcagctcat 4014153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15197864 - 15198106
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15197864 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacatactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 15197963  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 200  Q
    | |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15197964 tcgagcctcactaaatttatttatatcaagtataatttttcagtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttag 15198063  T
Q  201 cagc---actacacacaatccttgactacttccatcagttcat 240  Q
    ||||   ||||||||||||| ||||||||||| ||||||||||    
T  15198064 cagcagtactacacacaatctttgactacttctatcagttcat 15198106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 25880776 - 25880544
Alignment:
Q  10 aaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacgattgagcctc 109  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  25880776 aaaacaaatactttagttacaaccaaacaaaatactgactaagatatttaagaaaaaagactattattgatgagaagataaagaaaaacgattaagcctc 25880677  T
Q  110 actaaatttat--ttatatcaagtacaatttttctgtttcttattctcaaggtataaactacatattttagccatacaaactctcaaatttagcagcact 207  Q
    |||||||||||  ||||||||||||||||| || |||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  25880676 actaaatttatatttatatcaagtacaattattttgtttcttattctcaaggtataaattacatattttagtcatacaaactctcaaatttagcagcact 25880577  T
Q  208 acacacaatccttgactacttccatcagttcat 240  Q
    |||||||||||||||||||||| |||| |||||    
T  25880576 acacacaatccttgactacttctatcaattcat 25880544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 38443623 - 38443473
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  38443623 atttgaatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcatcagttaaagaaaaacga 38443524  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttc-tgtttctta 150  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38443523 ttgagcctcactaaatttatttatatcaagtacaatttttcttgtttctta 38443473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 11202 - 11371
Alignment:
Q  1 atttggatcaaaacaaatactttagttacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcataagataaagaaaaacga 100  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11202 atttgaatcaaaacaaatactttagtcacaaccaaacaaaatacttactaagatatttaagaaaaaagactattattgatcagaagataaagaaaaacga 11301  T
Q  101 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11302 ttgagcctcactaaatttatttatatcaagtacaatttttctgtttcttattctcaaggtataaactaca 11371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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