View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_high_5 (Length: 433)
Name: NF1357_high_5
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 18252981 - 18253370
Alignment:
| Q |
30 |
ggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtgatgttatgatttttccacaa |
129 |
Q |
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| T |
18252981 |
ggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtgatgttatgatttttccacaa |
18253080 |
T |
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| Q |
130 |
ggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18253081 |
ggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctt |
18253180 |
T |
|
| Q |
230 |
tgtttgaaagcgattttccaacgaagttgattactgcaactacttttattgatcctgctgtagtgaagaagcttaagagtgttcttggaggtagtggtta |
329 |
Q |
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| T |
18253181 |
tgtttgaaagcgattttccaacgaagttgattactgcaactacttttattgatcctgctgtagtgaagaagcttaagagtgttcttggaggtagtggtta |
18253280 |
T |
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| Q |
330 |
aactatatatgatgttattcatatgaaagattgaggaatcttcaggattactgggttttctttcaattatttatatttcatttcgttgtctctg |
423 |
Q |
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| T |
18253281 |
aac----tatgatgttattcatatgaaagaatgaggaatcttcaggattactgggttttcttttaattatttatctttcatttcgttgtgtctg |
18253370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 30 - 392
Target Start/End: Complemental strand, 18256587 - 18256230
Alignment:
| Q |
30 |
ggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtgatgttatgatttttccacaa |
129 |
Q |
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| T |
18256587 |
ggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtgatgttatgatttttccacaa |
18256488 |
T |
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| Q |
130 |
ggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18256487 |
ggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctt |
18256388 |
T |
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| Q |
230 |
tgtttgaaagcgattttccaacgaagttgattactgcaactacttttattgatcctgctgtagtgaagaagcttaagagtgttcttggaggtagtggtta |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||| |
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| T |
18256387 |
tgtttgaaagcgattttccaacgaagttgattactgcaactacttttattgatcctgctgtagtgaagaagcttaagggtattcttggaggtcgtggtta |
18256288 |
T |
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| Q |
330 |
aactatatatgatgttattcatatgaaagattgaggaatcttcaggattactgggttttcttt |
392 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||| |
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| T |
18256287 |
aa----ttatgatgttattcatatgaaagagtgaggaatcttcatg-ttactggcttttcttt |
18256230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 331
Target Start/End: Original strand, 18245877 - 18246178
Alignment:
| Q |
30 |
ggttgttattaaaggaacaatcagtgctggttttgtttcctctgacaatgttgtttaccttaaaacacttcacaaaggtgatgttatgatttttccacaa |
129 |
Q |
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|||||||||| ||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
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| T |
18245877 |
ggttgttattcaaggaacaatctgtgctggttttgtttcctctgccaacactgtttacattaaaacactttacaaaggtgatgttatggtttttccacaa |
18245976 |
T |
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| Q |
130 |
ggattgttgcatttccaaattaatgttggtggttctaatgcacttacttttaatagctttagtagtgctaatcctcgtttacagatattggattacgctt |
229 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||||||| |||| |
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| T |
18245977 |
ggattgttgcatttccaaattaacagtggtggttctaatgcacttgcttttgttagctttagtagtgctaaccctggtttacagatattggattttgctt |
18246076 |
T |
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| Q |
230 |
tgtttgaaagcgattttccaacgaagttgattactgcaactacttttattgatcctgctgtagtgaagaagcttaagagtgttcttggaggtagtggtta |
329 |
Q |
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||||| |||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
18246077 |
tgtttaaaagtgattttccaacggagttgattactgcaactacttttattgatgctgctgtagtgaagaagcttaagggtgttcttggaggtagtggtta |
18246176 |
T |
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| Q |
330 |
aa |
331 |
Q |
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|| |
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| T |
18246177 |
aa |
18246178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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