View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_high_6 (Length: 412)
Name: NF1357_high_6
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 29 - 399
Target Start/End: Original strand, 399021 - 399391
Alignment:
| Q |
29 |
acaaacgatgatggtaatgcagataaagttcagcatatgactaatgaatctcaacccaaacaaaaggaaccaaatgttgcatctttaaagggctcgcaaa |
128 |
Q |
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| T |
399021 |
acaaacgatgatggtaatgcagataaagttcagcatatgactgatgaatctcaacccaaacaaaaggaaccaaatgttgcatctttaaagggctcgcaaa |
399120 |
T |
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| Q |
129 |
agccagctgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacagtgatgtgtattacaatgaaaagattgatct |
228 |
Q |
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| T |
399121 |
agccagctgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacagtgatgtgtattacaatgaaaagattgatct |
399220 |
T |
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| Q |
229 |
tacagcgataaaggatgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaatcaagaggacaaaacctctgcagtaaatgc |
328 |
Q |
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| T |
399221 |
tacagcgataaaggctgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaatcaagaggacaaaacctctgcagtaaatgc |
399320 |
T |
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| Q |
329 |
aatgaagctggccaattactggtttgtactacttgcccattgatgctgcataaaaactgcctgggtgattc |
399 |
Q |
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| T |
399321 |
aatgaagctggccaattactggtttgtactacttgcccattgatgctgcataaaaactgcctgggtgattc |
399391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 36 - 399
Target Start/End: Original strand, 395939 - 396308
Alignment:
| Q |
36 |
atgatggtaatgcagataaagttcagcatatgactaatgaatctcaacccaaacaaaaggaaccaaatgttgcatctttaaagggctcgcaaaagccagc |
135 |
Q |
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| T |
395939 |
atgatggtaatgctgataaagttcagcatatgaataatgaatctcaacccaaacaaaaggaaccaaatgttgcatctttaaatggctcacaaaagccagt |
396038 |
T |
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| Q |
136 |
tgctagtgataaagctgtagttgatactgtcaatgattgtggagcagagttatcaagtgacagtgatgtgtattacaatgaaaagattgatcttacagcg |
235 |
Q |
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| T |
396039 |
tgccaatgataaagctttagtttatactgtctttgattgtggagcagagttatcaagtgacagtgatgtgtattacaatgaaaagattgatcttacagcg |
396138 |
T |
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| Q |
236 |
ataaaggatgaattcctgagttcccagcatgcttccggtcaagatttgccagcaatgactgaatcaagaggacaaaacctctgcagtaaatgcaatgaag |
335 |
Q |
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| T |
396139 |
aaaaaggatgaattcctgagctcccagcacgcttttggtcaagatttgccagcaatgattgaatcaagaggacgaaacctttgcagtaagtgcaatgaat |
396238 |
T |
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| Q |
336 |
ctggccaattactggtttg------tactacttgcccattgatgctgcataaaaactgcctgggtgattc |
399 |
Q |
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| T |
396239 |
ctggccaattactggtttgtaaaactactacttactcgttgatggtgcatataaactacctgggtgattc |
396308 |
T |
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