View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1357_high_7 (Length: 395)
Name: NF1357_high_7
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_high_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 48755491 - 48755237
Alignment:
| Q |
1 |
tgatattgtctgatactgagcaatcaaggcctaatgtgattaaaaaa-gtaaaagatccaagaatgttggtgttgatattttccaactcttcccaaagat |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48755491 |
tgatattgtctgatactgagcaatcaaggcctaatgtgattaaaaaaagtaaaagatccaagaatgttggtgttgatattttccaactcttcccaaagat |
48755392 |
T |
|
| Q |
100 |
caagattgtaacataaatacaaaaggaatccaaggaacactaaaaaactaacaagaaatacaattgcaacaagttatatcaaatgtaatatacttnnnnn |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
48755391 |
caagattgtaacataaatacaaaaggaatccaaggaacactaaaaaactaacaagaaatacaattgcaacaagttatatcaaatgta--atacttaaaaa |
48755294 |
T |
|
| Q |
200 |
nnngtgtatcacatattcacatttgacaagatataattcatgtgcaagacttttgtc |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48755293 |
aaagtgtatcacatattcacatttgacaagatataattcatttgcaagacttttgtc |
48755237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University