View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1357_low_11 (Length: 399)

Name: NF1357_low_11
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1357_low_11
NF1357_low_11
[»] chr4 (9 HSPs)
chr4 (103-325)||(566608-566830)
chr4 (124-176)||(5035628-5035680)
chr4 (121-175)||(12124827-12124881)
chr4 (249-290)||(1523994-1524035)
chr4 (130-175)||(12126892-12126937)
chr4 (124-164)||(2367689-2367729)
chr4 (124-176)||(2460603-2460655)
chr4 (124-176)||(2486313-2486365)
chr4 (124-176)||(2525763-2525815)
[»] chr6 (9 HSPs)
chr6 (103-202)||(12097396-12097495)
chr6 (130-170)||(6437161-6437201)
chr6 (118-182)||(7132543-7132607)
chr6 (118-182)||(7135466-7135530)
chr6 (118-176)||(6395775-6395833)
chr6 (249-290)||(9412454-9412495)
chr6 (246-287)||(14810041-14810082)
chr6 (117-174)||(14821621-14821678)
chr6 (118-182)||(6427422-6427486)
[»] chr7 (4 HSPs)
chr7 (121-182)||(15091350-15091411)
chr7 (118-182)||(10168807-10168871)
chr7 (118-182)||(10176332-10176396)
chr7 (118-176)||(7978108-7978165)
[»] chr3 (2 HSPs)
chr3 (249-287)||(51120330-51120368)
chr3 (118-182)||(51763147-51763211)
[»] chr5 (3 HSPs)
chr5 (124-173)||(32268776-32268825)
chr5 (249-287)||(41886296-41886334)
chr5 (124-182)||(41900251-41900309)
[»] chr1 (4 HSPs)
chr1 (124-164)||(15837976-15838016)
chr1 (118-182)||(33161433-33161497)
chr1 (253-290)||(7561347-7561384)
chr1 (249-298)||(9582035-9582084)
[»] chr8 (1 HSPs)
chr8 (124-182)||(32152212-32152270)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 103 - 325
Target Start/End: Original strand, 566608 - 566830
Alignment:
Q  103 ggagtacagatagcaagtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaatatcaagtaattatcacgat 202  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566608 ggagtacagatagcaagtgaaaatcgaagactgtcggtgatggagagaaactgtttggagactaaggagagagaattcaatatcaagtaattatcacgat 566707  T
Q  203 tcttgtttctgtattcgttgctgatgatgaatttgttggtgacgatgaatttgaagacacgttcccaacagtcatcaggtaaataaaagtctgttgttgt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566708 tcttgtttctgtattcgttgctgatgatgaatttgttggtgacgatgaatttgaagacacgttcccaacagtcatcaggtaaataaaagtctgttgttgt 566807  T
Q  303 tggtgttgtatttgtctgtggtg 325  Q
    ||||||||||||||||| |||||    
T  566808 tggtgttgtatttgtctttggtg 566830  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 5035628 - 5035680
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    ||||||||||||| ||||||||||||||||||||| || || ||||| |||||    
T  5035628 aatcgaagacggttggtgatggagagaaactgttttgaaacgaaggaaagaga 5035680  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 175
Target Start/End: Original strand, 12124827 - 12124881
Alignment:
Q  121 gaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagag 175  Q
    |||||| | ||||||| ||||||||||||||| ||||||||||| | ||||||||    
T  12124827 gaaaattggagacggttggtgatggagagaaattgtttggagacaatggagagag 12124881  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 1524035 - 1523994
Alignment:
Q  249 gaatttgaagacacgttcccaacagtcatcaggtaaataaaa 290  Q
    |||||||||||||  ||||||||||||||||||||| |||||    
T  1524035 gaatttgaagacagattcccaacagtcatcaggtaagtaaaa 1523994  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 175
Target Start/End: Original strand, 12126892 - 12126937
Alignment:
Q  130 agacggtcggtgatggagagaaactgtttggagactaaggagagag 175  Q
    ||||||| ||||||||||||||| ||||||||||| | ||||||||    
T  12126892 agacggttggtgatggagagaaattgtttggagacaatggagagag 12126937  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 2367729 - 2367689
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagac 164  Q
    ||||| ||||||| ||||||||||||||| |||||||||||    
T  2367729 aatcggagacggttggtgatggagagaaattgtttggagac 2367689  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2460603 - 2460655
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    ||||| ||||| | |||||||||||| |||||||||||||| | |||||||||    
T  2460603 aatcggagacgattggtgatggagaggaactgtttggagaccatggagagaga 2460655  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2486313 - 2486365
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    ||||| ||||||| ||||||||| ||||||||||| ||||| | |||||||||    
T  2486313 aatcggagacggttggtgatggacagaaactgttttgagacgagggagagaga 2486365  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 2525763 - 2525815
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    |||||||||| || ||||||||| ||||||||||| ||||| | |||||||||    
T  2525763 aatcgaagactgttggtgatggacagaaactgttttgagacgagggagagaga 2525815  T

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Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 12097396 - 12097495
Alignment:
Q  103 ggagtacagatagcaagtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaatatcaagtaattatcacgat 202  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||||||| |||||||||||||| ||||||||||||||  ||||||||  ||||||||    
T  12097396 ggagtacagatagtaagtgaaaatcgaagacggtctctgatgaagagaaattgtttggagactaaagagagagaattcaaagtcaagtaacgatcacgat 12097495  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 170
Target Start/End: Original strand, 6437161 - 6437201
Alignment:
Q  130 agacggtcggtgatggagagaaactgtttggagactaagga 170  Q
    ||||||| |||||||||||| ||||||||||||||||||||    
T  6437161 agacggttggtgatggagaggaactgtttggagactaagga 6437201  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 7132543 - 7132607
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| |||||| |||||||| |||||||||| |||| ||||||||| || || |||||||||||    
T  7132543 agtgagaatcgacgacggtcgatgatggagaggaactctttggagacaaaagaaagagaattcaa 7132607  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 7135466 - 7135530
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| |||||| |||||||| |||||||||| |||| ||||||||| || || |||||||||||    
T  7135466 agtgagaatcgacgacggtcgatgatggagaggaactctttggagacaaaagaaagagaattcaa 7135530  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 6395775 - 6395833
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    ||||||||||||||| | | |||||||||||| ||||| |||||||| | |||||||||    
T  6395775 agtgaaaatcgaagatgattggtgatggagaggaactgcttggagacgagggagagaga 6395833  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 9412454 - 9412495
Alignment:
Q  249 gaatttgaagacacgttcccaacagtcatcaggtaaataaaa 290  Q
    ||||||||||| || ||||||||| |||||||||||||||||    
T  9412454 gaatttgaagatactttcccaacattcatcaggtaaataaaa 9412495  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 287
Target Start/End: Original strand, 14810041 - 14810082
Alignment:
Q  246 gatgaatttgaagacacgttcccaacagtcatcaggtaaata 287  Q
    ||||||| | ||||||||||||||||| ||||||||||||||    
T  14810041 gatgaatctaaagacacgttcccaacactcatcaggtaaata 14810082  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 14821621 - 14821678
Alignment:
Q  117 aagtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagaga 174  Q
    |||||||||||||||||| | |||||| ||||| ||||| |||||||| | |||||||    
T  14821621 aagtgaaaatcgaagacgattggtgatagagaggaactgcttggagacgagggagaga 14821678  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 6427422 - 6427486
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||||| | ||||||| | |||||||||||| ||||| |||||||| | |||||||||| ||||    
T  6427422 agtgaaatttgaagacgattggtgatggagaggaactgcttggagacgagggagagagaactcaa 6427486  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 15091411 - 15091350
Alignment:
Q  121 gaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    |||||| |||||| || |||||||||||| |||||||||||||| | |||||||||||||||    
T  15091411 gaaaatagaagactgttggtgatggagaggaactgtttggagacgagggagagagaattcaa 15091350  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 10168871 - 10168807
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| |||||||||  || |||||||||||| |||||||||||||| | ||| |||||||||||    
T  10168871 agtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaa 10168807  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 10176396 - 10176332
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| |||||||||  || |||||||||||| |||||||||||||| | ||| |||||||||||    
T  10176396 agtgataatcgaagagtgttggtgatggagaggaactgtttggagacaagggatagagaattcaa 10176332  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 7978108 - 7978165
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagaga 176  Q
    |||||||||| |||||||| ||||||||||||||||||  | ||||| |||||||||||    
T  7978108 agtgaaaatctaagacggttggtgatggagagaaactgcat-gagacgaaggagagaga 7978165  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 51120368 - 51120330
Alignment:
Q  249 gaatttgaagacacgttcccaacagtcatcaggtaaata 287  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  51120368 gaatttgaagacacattcccaacagtcatcaggtaaata 51120330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 51763211 - 51763147
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| ||||| | ||||| |||||||||||| ||||||||||| || | |||||||||||||||    
T  51763211 agtgagaatcggaaacggtgggtgatggagaggaactgtttggaaacgatggagagagaattcaa 51763147  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 32268776 - 32268825
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagag 173  Q
    ||||||||||||| |||||||||||| |||||||||||||| | ||||||    
T  32268776 aatcgaagacggttggtgatggagagtaactgtttggagacgatggagag 32268825  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 287
Target Start/End: Complemental strand, 41886334 - 41886296
Alignment:
Q  249 gaatttgaagacacgttcccaacagtcatcaggtaaata 287  Q
    |||||||||||||| ||||||||| ||||||||||||||    
T  41886334 gaatttgaagacacattcccaacactcatcaggtaaata 41886296  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Complemental strand, 41900309 - 41900251
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    |||||||||  || ||||||||||||||||||||||||||| |  |||||||| |||||    
T  41900309 aatcgaagagtgttggtgatggagagaaactgtttggagacgagtgagagagatttcaa 41900251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 164
Target Start/End: Complemental strand, 15838016 - 15837976
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagac 164  Q
    ||||| ||||||| |||||||||||||||||||||||||||    
T  15838016 aatcggagacggttggtgatggagagaaactgtttggagac 15837976  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 182
Target Start/End: Original strand, 33161433 - 33161497
Alignment:
Q  118 agtgaaaatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| ||||||||||  |  |||||||||||||||||||||||||| | ||| |||||||||||    
T  33161433 agtgagaatcgaagactattagtgatggagagaaactgtttggagacgagggatagagaattcaa 33161497  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 290
Target Start/End: Original strand, 7561347 - 7561384
Alignment:
Q  253 ttgaagacacgttcccaacagtcatcaggtaaataaaa 290  Q
    ||||||||| ||| ||||||||||||||||||||||||    
T  7561347 ttgaagacatgtttccaacagtcatcaggtaaataaaa 7561384  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Original strand, 9582035 - 9582084
Alignment:
Q  249 gaatttgaagacacgttcccaacagtcatcaggtaaataaaagtctgttg 298  Q
    ||||||||||||   |||||||||||||| |||||||||||| |||||||    
T  9582035 gaatttgaagacggattcccaacagtcattaggtaaataaaaatctgttg 9582084  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 32152212 - 32152270
Alignment:
Q  124 aatcgaagacggtcggtgatggagagaaactgtttggagactaaggagagagaattcaa 182  Q
    ||||| |||| || |||||||||||| |||||||||||||| | |||||| ||||||||    
T  32152212 aatcggagactgttggtgatggagaggaactgtttggagacgagggagagtgaattcaa 32152270  T

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