View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_13 (Length: 395)
Name: NF1357_low_13
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 83 - 314
Target Start/End: Original strand, 48755525 - 48755756
Alignment:
| Q |
83 |
atgtaataaccatatattttttccggttgtcaaacatggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttattta |
182 |
Q |
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| T |
48755525 |
atgtaataaccatatattttttccggttgtcaaacatggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttatcta |
48755624 |
T |
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| Q |
183 |
tttgcaggtctgaaactatttacttgtttgataaaatacaaaagttaacgacctagaaggattcccttgtctcaccctatctgttatcgccattatgagc |
282 |
Q |
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| T |
48755625 |
tttgcaggtctgaaactatttacttgtttgataaaatgcaaaagttaacgacctagaaggattcccttgtctccccctatctattatcgcctttatgagc |
48755724 |
T |
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| Q |
283 |
gattaagccttgaactgtatttgatgatgtcc |
314 |
Q |
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| T |
48755725 |
gattaagccttgaactgtatttgttgatgtcc |
48755756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 48755467 - 48755525
Alignment:
| Q |
1 |
gattgctcagtatcagacaatatcagctcaagtctactggataattttacttgtctttta |
60 |
Q |
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| T |
48755467 |
gattgctcagtatcagacaatatcagctcaagtcta-tggataattttacttgtctttta |
48755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 11326842 - 11326781
Alignment:
| Q |
120 |
ggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttattt |
181 |
Q |
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| T |
11326842 |
ggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggtcttaatcttattt |
11326781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 11484863 - 11484802
Alignment:
| Q |
120 |
ggtatagagatgatcgtgcagtggaatcaagagataaaggtaggaaggtctgaatcttattt |
181 |
Q |
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| T |
11484863 |
ggtatagatatgatcttgcagtggaatcaagagataaaggcaggaaggtcttaatcttattt |
11484802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Original strand, 47800250 - 47800340
Alignment:
| Q |
141 |
tggaatcaagagataaaggtaggaaggtctgaatcttatttatttgcaggtctgaaactatttacttgtttgataaaatacaaaagttaac |
231 |
Q |
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| T |
47800250 |
tggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaac |
47800340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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