View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_14 (Length: 384)
Name: NF1357_low_14
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 96 - 318
Target Start/End: Complemental strand, 10084543 - 10084314
Alignment:
| Q |
96 |
gaacgcaggttgttactcatgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgc |
195 |
Q |
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| T |
10084543 |
gaacgcaggttgttactcatgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgc |
10084444 |
T |
|
| Q |
196 |
aaatgatat-------aatgaagaaatgtaactttgaatattatgagaatgaggaggaattattagcatttaattagcaatccgtaataatcttcaaaag |
288 |
Q |
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| T |
10084443 |
aaatgatatgagatacaatgaagaaatgtaactttgaatattatgagaatgaggaggaattattagcatttaattagcaatccgtaataatcttcaaaag |
10084344 |
T |
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| Q |
289 |
caagcaatcaagtagtagtttacactactt |
318 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
10084343 |
caagcaatcaagtagtagtttacactactt |
10084314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 115 - 309
Target Start/End: Complemental strand, 10080451 - 10080250
Alignment:
| Q |
115 |
tgatctagttagagcggctatatatatggttaatcattaagtcctaaacttgatgccaaattgtattgttgatgttattgcaaatgatat-------aat |
207 |
Q |
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| T |
10080451 |
tgatctaattagggcagctatatatatggttaatcattaagtcctcaatttgatgccaaattgtattgttgatgctattacgaatgatatgagataaaat |
10080352 |
T |
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| Q |
208 |
gaagaaatgtaactttgaatattatgagaatg-aggaggaattattagcatttaattagcaatccgtaat-aatcttcaaaagcaagcaatcaagtagta |
305 |
Q |
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| T |
10080351 |
gaagaaatgtaactttgaatattatgagaatgaagaaggaattcttagcatttaattagcagtccataataaatctccaaaagc--gcaatcaagtagta |
10080254 |
T |
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| Q |
306 |
gttt |
309 |
Q |
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|||| |
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| T |
10080253 |
gttt |
10080250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 10096952 - 10096913
Alignment:
| Q |
96 |
gaacgcaggttgttactcatgatctagttagagcggctat |
135 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
10096952 |
gaacgcaggttgttactcataatctagttagagcggctat |
10096913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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