View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1357_low_15 (Length: 376)

Name: NF1357_low_15
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1357_low_15
NF1357_low_15
[»] chr2 (5 HSPs)
chr2 (36-120)||(34578931-34579015)
chr2 (36-120)||(34584680-34584764)
chr2 (50-120)||(34562683-34562753)
chr2 (50-120)||(34571477-34571547)
chr2 (50-109)||(13576386-13576445)
[»] chr8 (3 HSPs)
chr8 (50-109)||(41943982-41944041)
chr8 (50-91)||(25865756-25865797)
chr8 (50-91)||(44344011-44344052)
[»] chr1 (1 HSPs)
chr1 (50-99)||(7594162-7594211)
[»] chr5 (2 HSPs)
chr5 (50-109)||(12531530-12531589)
chr5 (50-109)||(12547030-12547089)


Alignment Details
Target: chr2 (Bit Score: 81; Significance: 5e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 34578931 - 34579015
Alignment:
Q  36 accataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34578931 accataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcct 34579015  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 34584680 - 34584764
Alignment:
Q  36 accataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  34584680 accataacggtgatcctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcct 34584764  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 34562683 - 34562753
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  34562683 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct 34562753  T

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Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 120
Target Start/End: Original strand, 34571477 - 34571547
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactacttcct 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||    
T  34571477 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcct 34571547  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 13576445 - 13576386
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 109  Q
    ||||||||||||||| ||||| | ||| |||||||||||||||||||| | |||||||||    
T  13576445 cctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttc 13576386  T

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Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 41944041 - 41943982
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 109  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  41944041 cctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttc 41943982  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 25865797 - 25865756
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaa 91  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  25865797 cctcttagcatgaattgcacacaaattagtatcctcaaacaa 25865756  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 44344052 - 44344011
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaa 91  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  44344052 cctcttagcatgaatagcacacaaattggtatcctcaaacaa 44344011  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 7594162 - 7594211
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaacca 99  Q
    ||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  7594162 cctcttagcatgaattgcacacagattggtgtcctcaaacaatccaacca 7594211  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 12531589 - 12531530
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 109  Q
    ||||||||||||||| ||||| | ||| ||||| |||||||||||||| | |||||||||    
T  12531589 cctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc 12531530  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 12547030 - 12547089
Alignment:
Q  50 cctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttc 109  Q
    ||||||||||||||| ||||| | ||| ||||| |||||||||||||| | |||||||||    
T  12547030 cctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttc 12547089  T

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