View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1357_low_17 (Length: 329)
Name: NF1357_low_17
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 11688782 - 11688668
Alignment:
| Q |
189 |
aatttctgagctagccaccatttttctctttctcatttcctt-atgaaatgtgtagtgggttttgaaaaagctttctttttcacctattcaacttcaaaa |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11688782 |
aatttctgagctagccaccatttttctctttctcatttcctttatcaaatgtgtagtgggttttgaaagagctttctttttcacctattcaacttcaaaa |
11688683 |
T |
|
| Q |
288 |
gcaataccaccttag |
302 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
11688682 |
gcaataccaccttag |
11688668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 4 - 127
Target Start/End: Complemental strand, 11688970 - 11688844
Alignment:
| Q |
4 |
ggaggagcagagaagcaacacaagaataattattaacatattagagaagaagcacagcatag----gcaacaactcaaacactaagatgattaacatctt |
99 |
Q |
| |
|
|||| |||||||||||||||||||| || ||||||||||||||||| ||||||||| ||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
11688970 |
ggagtagcagagaagcaacacaagatta-ttattaacatattagagcagaagcacaacatagataggcaataactcaaacactaagatgattaacatctt |
11688872 |
T |
|
| Q |
100 |
aacaatgggggcctaagtgggacccatg |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||| |
|
|
| T |
11688871 |
aacaatgggggcctaagtaggacccatg |
11688844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University