View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_2 (Length: 784)
Name: NF1357_low_2
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 30 - 771
Target Start/End: Original strand, 46959282 - 46960021
Alignment:
| Q |
30 |
caaagtatgatggaagataaatattttcgagatatagtccttcacatggataggtatcactgcaggcaaatttaatggtttctttggaggccgaagttcc |
129 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46959282 |
caaagtatgatggaagataaatattttcgagatgtagtccttcacatggataggtatcactgcaggcaaatttaatggtttcttcggaggccgaagttcc |
46959381 |
T |
|
| Q |
130 |
tataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagnnnnnnntcttcagttga |
229 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
46959382 |
tataatattaatgaaggatatgttcaccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagaaaaaaatcatcagttga |
46959481 |
T |
|
| Q |
230 |
attaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactgacatacatgattataatcgatgaaaattatga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
46959482 |
attaaaatcattatgaaagttcattaatttgaatccttgtaggagattgacaagaatgtatgtcactgacat----gattataattgatgaaaattatga |
46959577 |
T |
|
| Q |
330 |
aatcagctattatattctacaaatcataaagacaattcaaaactatattggctatctcctcagataaataaatacaactattaataatgtgtcactgcat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46959578 |
aatcagctattatattctacaaatcataaagacaattcaaaactatattggctatctcctcagataaataaatacaactattaataatgtgtcactgcat |
46959677 |
T |
|
| Q |
430 |
gcacatgtagacttacaaaacgaccctgcaaaaatatcttaaaattcaatacctgattcttgcatggaattcgggaatcacagtagtattgatcaattat |
529 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
46959678 |
gcacatgtagacttgcaaaatgaccctgcaaaaatatcttaaaattcaatacctgattcttgcatggaagtcgggaatcacagtagtattgatcaattat |
46959777 |
T |
|
| Q |
530 |
tattggattggacacattttccaccacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaat |
629 |
Q |
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| T |
46959778 |
tattggattggacacattttccatcacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaat |
46959877 |
T |
|
| Q |
630 |
tgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccatttttcgtgttcgtaagat |
729 |
Q |
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| T |
46959878 |
tgaacattactgggtgacatttaatgagaatgaaaatgctaaggttaccaacttacctgccatgttttgattctcagcccatttttcgtgttcgtaagat |
46959977 |
T |
|
| Q |
730 |
aagctcc--atatacatttacattttcaatcttctcccatgcct |
771 |
Q |
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| T |
46959978 |
aagctccatatatacatttacattttcaatcttctcccatgcct |
46960021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 134; Significance: 2e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 30 - 301
Target Start/End: Complemental strand, 44522837 - 44522569
Alignment:
| Q |
30 |
caaagtatgatggaagataaatattttcgagatatagtccttcacatggataggtatcactgcaggcaaatttaatggtttctttggaggccgaagttcc |
129 |
Q |
| |
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||||||||||| ||||| |||||||||| |||||||||||||| |||||| | | ||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
44522837 |
caaagtatgatcgaagaaaaatattttccagatatagtccttcgcatggagaagcatcactgcaggcaaatttaatggtttcttcggtggccgaagttcc |
44522738 |
T |
|
| Q |
130 |
tataatattaatgaaggatatgttcgccacttgaacagctgaagtctgcatcacaattcaggacattattacattcttacagnnnnnnntcttcagttga |
229 |
Q |
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| T |
44522737 |
ttgaatattaatgaaggatatgttccccacttgaacagctgaagtctgcatcacaatgcattac---attaaatttttacagcataatatcttcagttga |
44522641 |
T |
|
| Q |
230 |
attaaaatcattatgaaagttcattaatttgaatccttgtaggagatt-gacaagaatgtatgtcactgacat |
301 |
Q |
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||| |||| || |||||| ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||| |
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| T |
44522640 |
att-aaattatcatgaaacttcattaatttgaatccttgttggagattcgacaggaatgtatgtcactgacat |
44522569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 452 - 767
Target Start/End: Complemental strand, 44522455 - 44522137
Alignment:
| Q |
452 |
accctgcaaaaatatcttaaaattcaatacctgattcttgcatggaattcgggaatcacagtagtattgatcaattattattggattggacacattttcc |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44522455 |
accctgcaaaaatatcttaaaattcaatacctgattcttgcatggatgtcgtgaatcgcagtagtattgatctattattattggattggacacattttcc |
44522356 |
T |
|
| Q |
552 |
accacgatatcctgaaatgtgatattggaggcaagaccatgcccaccctaaagaaaatttaacttgactcaatcaaattgaacattactgggtgacattt |
651 |
Q |
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| | ||||| ||| |||||||| |||||||||| |||| ||||||||||||||||||| || |||||||| | ||| ||| ||| ||||| || |
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| T |
44522355 |
attaagatattctggaatgtgatcttggaggcaaaaccactcccaccctaaagaaaatttggctcgactcaatagacttg-tcatcactaggtgaaatag |
44522257 |
T |
|
| Q |
652 |
aatgagaatgaaaatgctaaggttac----caacttacctgccatgttttgattctcagcccatttttcgtgttcgtaagataagctccatatacattta |
747 |
Q |
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|||||||||||||||| || |||||| || |||||||||||||||||||||||| |||||| | ||||| |||||||||||||| ||| ||| |
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| T |
44522256 |
aatgagaatgaaaatgatacggttacgaagaaagttacctgccatgttttgattctcaccccattatcagtgttgtaaagataagctccatcaacaatta |
44522157 |
T |
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| Q |
748 |
cattttcaatcttctcccat |
767 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
44522156 |
cattttgaatcttctcccat |
44522137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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