View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1357_low_23 (Length: 289)
Name: NF1357_low_23
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 55 - 220
Target Start/End: Original strand, 17118751 - 17118916
Alignment:
| Q |
55 |
aaacatagtagccatgttgttggtctcgtcaacatcatcaattcagctgtcaacaaccaacgtgaccagcatagcacgacatcaacgccacaaagatggc |
154 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17118751 |
aaacatagtagccatgttgttggtctcctcaacgtcatcaattcagctgtcaacaaccaatgtgaccagcatagcacgacaacaacgccacaaagatggc |
17118850 |
T |
|
| Q |
155 |
agtgttcgcaagctgagaggtataagtgtagatgagttctcagcctcccgaaatagagtgggtatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17118851 |
agtgttcgcaagctgagaggtataagtgtagatgagttctcagcctcccgaaatagagtgggtatt |
17118916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University