View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_28 (Length: 253)
Name: NF1357_low_28
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9836392 - 9836616
Alignment:
| Q |
1 |
aaatacctatgatgctatcatacatttttaacattaaaacttttaaatttgtatataaatgttgacaaaaaagctggaccagtgttctcaataaaattta |
100 |
Q |
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| T |
9836392 |
aaatacctatgatgctatcatacatttttaacattaaaacttttaaatttgtatataaatgttgacaaaaaagctggaccagtgttctcaataaaattta |
9836491 |
T |
|
| Q |
101 |
tagacaataaacacttcagtaagtgctttatagagcttttttcaacaaaccctaaactaacttatgaaaacaatgaaaatagattatccaaatgcctcct |
200 |
Q |
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| T |
9836492 |
tagacaataaacacttcagtaagtgctttatagagcttttttcaacaaaccctaaactaacttatgaaaacaatgaaaatagattatccaaatgcctcct |
9836591 |
T |
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| Q |
201 |
ttgattgtagaattacattatacat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
9836592 |
ttgattgtagaattacattatacat |
9836616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9847270 - 9847494
Alignment:
| Q |
1 |
aaatacctatgatgctatcatacatttttaacattaaaacttttaaatttgtatataaatgttgacaaaaaagctggaccagtgttctcaataaaattta |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847270 |
aaatacctatgatgctatcatacatttttaacattaaaacttttaaatttgtatataaatgttgacaaaaaagctggaccagtgttctcaataaaattta |
9847369 |
T |
|
| Q |
101 |
tagacaataaacacttcagtaagtgctttatagagcttttttcaacaaaccctaaactaacttatgaaaacaatgaaaatagattatccaaatgcctcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9847370 |
tagacaataaacacttcagtaagtgctttatagagcttttttcaacaaaccctaaactaacttatgaaaacaatgaaaatagattatccaaatgcctcct |
9847469 |
T |
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| Q |
201 |
ttgattgtagaattacattatacat |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
9847470 |
ttgattgtagaattacattatacat |
9847494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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