View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_29 (Length: 251)
Name: NF1357_low_29
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10080120 - 10080011
Alignment:
| Q |
1 |
cttttttacctattccatatttgtgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttga |
100 |
Q |
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| T |
10080120 |
cttttttacctattccatttttgtgatttagccattaaatccaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttga |
10080021 |
T |
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| Q |
101 |
ccttttggtg |
110 |
Q |
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| T |
10080020 |
ccttttggtg |
10080011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10084316 - 10084207
Alignment:
| Q |
1 |
cttttttacctattccatatttgtgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttga |
100 |
Q |
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| T |
10084316 |
ctttttcaccttttccaattttgtgatttagccattaaatccaacgggtgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttga |
10084217 |
T |
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| Q |
101 |
ccttttggtg |
110 |
Q |
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|||||||||| |
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| T |
10084216 |
ccttttggtg |
10084207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10096774 - 10096664
Alignment:
| Q |
1 |
cttttttacctattccatatttgtgatttagccattaaattcaacggttgtaccctctttagcatgtgaagtaag--aaaaaagatggataaagattttt |
98 |
Q |
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| T |
10096774 |
ctttttcaccttttccatttttatgatttagccattaaatccaacggttgta-cctctttggcatgtgaagtaagaaaaaaaagatggataaaggttttt |
10096676 |
T |
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| Q |
99 |
gaccttttggtg |
110 |
Q |
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| T |
10096675 |
gaccttttggtg |
10096664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 10084140 - 10084082
Alignment:
| Q |
182 |
ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatc |
241 |
Q |
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| T |
10084140 |
ttgcatgttt-ttgtctataaattgagtcagtcacaactcaaattttccattcattcatc |
10084082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 241
Target Start/End: Complemental strand, 10096596 - 10096537
Alignment:
| Q |
182 |
ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatc |
241 |
Q |
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| T |
10096596 |
ttgcatgtttcttgtctataaattcagtcagttacaactcacattttccattcattcatc |
10096537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 242
Target Start/End: Complemental strand, 10079941 - 10079882
Alignment:
| Q |
182 |
ttgcatgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcatct |
242 |
Q |
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| T |
10079941 |
ttgcatgttt-ttgtctataaattgagtcagtcacaacccacattttccattcattcatct |
10079882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 10086489 - 10086434
Alignment:
| Q |
185 |
catgtttcttgtctataaattgagtcagtcacaactcaaattttccattcattcat |
240 |
Q |
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| T |
10086489 |
catgtttcttgtctataaattgagtcactcacaatcctcactttccattcattcat |
10086434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 10261268 - 10261322
Alignment:
| Q |
48 |
ttgtaccctctttagcatgtgaagtaagaaaaaagatggataaagatttttgacct |
103 |
Q |
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| T |
10261268 |
ttgtaccctctttggcgtgtgaagtaa-aaaaaagattgttaaagatttttgacct |
10261322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 10075647 - 10075597
Alignment:
| Q |
55 |
ctctttagcatgtgaagtaagaaaaaagatggataaagatttttgaccttt |
105 |
Q |
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|||||| || ||||||||| ||||||||||| |||||| |||||||||||| |
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| T |
10075647 |
ctctttggcgtgtgaagtaggaaaaaagatgcataaagttttttgaccttt |
10075597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 10090521 - 10090473
Alignment:
| Q |
192 |
cttgtctataaattgagtcagtcacaactcaaattttccattcattcat |
240 |
Q |
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| T |
10090521 |
cttgtctataaattgagtcattcacaaccctcattttcccttcattcat |
10090473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 10103979 - 10103931
Alignment:
| Q |
192 |
cttgtctataaattgagtcagtcacaactcaaattttccattcattcat |
240 |
Q |
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|||||||||||||||||||| ||||||| | | ||||||||||||||| |
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| T |
10103979 |
cttgtctataaattgagtcactcacaaccctcactttccattcattcat |
10103931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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