View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1357_low_3 (Length: 558)

Name: NF1357_low_3
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1357_low_3
NF1357_low_3
[»] chr3 (5 HSPs)
chr3 (76-294)||(18202034-18202252)
chr3 (256-375)||(18201849-18201968)
chr3 (255-332)||(18201969-18202046)
chr3 (470-529)||(34899916-34899975)
chr3 (320-375)||(18201775-18201830)
[»] chr7 (4 HSPs)
chr7 (117-294)||(35345205-35345382)
chr7 (255-370)||(35345044-35345156)
chr7 (255-297)||(35345175-35345217)
chr7 (451-480)||(35345007-35345036)
[»] chr6 (5 HSPs)
chr6 (117-294)||(2272266-2272443)
chr6 (255-370)||(2272105-2272217)
chr6 (255-297)||(2272236-2272278)
chr6 (412-454)||(26840167-26840209)
chr6 (412-454)||(26840600-26840642)
[»] chr5 (4 HSPs)
chr5 (117-294)||(39343753-39343930)
chr5 (255-370)||(39343592-39343704)
chr5 (255-297)||(39343723-39343765)
chr5 (451-480)||(39343555-39343584)
[»] chr1 (8 HSPs)
chr1 (117-294)||(4009597-4009774)
chr1 (255-370)||(4009436-4009548)
chr1 (255-297)||(4009567-4009609)
chr1 (365-407)||(37907373-37907415)
chr1 (307-348)||(37907219-37907260)
chr1 (308-348)||(37907259-37907299)
chr1 (308-348)||(37907298-37907338)
chr1 (451-480)||(4009399-4009428)
[»] chr8 (3 HSPs)
chr8 (357-480)||(18290988-18291119)
chr8 (117-174)||(18290784-18290841)
chr8 (76-110)||(18290763-18290797)
[»] scaffold0521 (3 HSPs)
scaffold0521 (357-480)||(5133-5264)
scaffold0521 (117-174)||(4929-4986)
scaffold0521 (76-110)||(4908-4942)
[»] scaffold0187 (4 HSPs)
scaffold0187 (365-407)||(31662-31704)
scaffold0187 (307-348)||(31817-31858)
scaffold0187 (308-348)||(31739-31779)
scaffold0187 (308-348)||(31778-31818)


Alignment Details
Target: chr3 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 76 - 294
Target Start/End: Complemental strand, 18202252 - 18202034
Alignment:
Q  76 gagatgaacctatgagaagatcctcgttgccggagttagggcctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttca 175  Q
    |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18202252 gagacgaacctatgagaatatcctggttgccggagttagggcctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttca 18202153  T
Q  176 gatccgtaatggaggagacgtcggaggagtaaagcggtggagatcgatggagtagaatgacagcggaaactcaactcggcggagatggaagcgatagaga 275  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||    
T  18202152 gatccgtgatggaggagacgtcggaggagtaaagcggtggagatcgatggagtagaatgacagcggaaactgaactcgacggagatggaagcgataaaga 18202053  T
Q  276 tgacggcggagacggaagc 294  Q
    ||||| |||||| ||||||    
T  18202052 tgacgtcggagatggaagc 18202034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 256 - 375
Target Start/End: Complemental strand, 18201968 - 18201849
Alignment:
Q  256 ggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagattgatt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18201968 ggagatggaagcgatagagatgacggcggagacggaagcaagtgagaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagactgatt 18201869  T
Q  356 ggaaaaatttgagtgtgaga 375  Q
    ||||||||||||||||||||    
T  18201868 ggaaaaatttgagtgtgaga 18201849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 18202046 - 18201969
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattt 332  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18202046 cggagatggaagcgatagagatgacggtggagacggaagcaagtgcgaatgagaggattgagtgcgagatgaaaattt 18201969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 470 - 529
Target Start/End: Original strand, 34899916 - 34899975
Alignment:
Q  470 gagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34899916 gagagatgtgtttatatgcatataggtaaagtttggtagtttcaactttcaagttgagat 34899975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 18201830 - 18201775
Alignment:
Q  320 gagatgaaaattttgggggttaggtttagattgattggaaaaatttgagtgtgaga 375  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18201830 gagatgaaaattttgggggttaggtttagactgattggaaaaatttgagtgtgaga 18201775  T

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Target: chr7 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 35345382 - 35345205
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttcagatccgtaatggaggagacgtcggaggagtaaagcggtgga 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  35345382 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga 35345283  T
Q  217 gatcgatggagtagaatgacagcggaaactcaactcggcggagatggaagcgatagagatgacggcggagacggaagc 294  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||    
T  35345282 gatcgatggagtagaatgacagcggaaactgaactcgacggagatggaagcgatagagatgacgtcggagatggaagc 35345205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 35345156 - 35345044
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagattgat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||   | ||   ||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  35345156 cggagatggaagcgatagagatgacggcggagacggaagcaagaagcgat---aggattgagtgggagatgaaaattttgggggttaagtttagactgat 35345060  T
Q  355 tggaaaaatttgagtg 370  Q
    ||||||||| ||||||    
T  35345059 tggaaaaatctgagtg 35345044  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 35345217 - 35345175
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  35345217 cggagatggaagcgatagagatgacggcggagacggaagcaag 35345175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 35345036 - 35345007
Alignment:
Q  451 tcgggtgtgagagaaaagggagagatgtgt 480  Q
    ||||||||||||||||||||||||||||||    
T  35345036 tcgggtgtgagagaaaagggagagatgtgt 35345007  T

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Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 2272443 - 2272266
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttcagatccgtaatggaggagacgtcggaggagtaaagcggtgga 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  2272443 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga 2272344  T
Q  217 gatcgatggagtagaatgacagcggaaactcaactcggcggagatggaagcgatagagatgacggcggagacggaagc 294  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||    
T  2272343 gatcgatggagtagaatgacagcggaaactgaactcgacggagatggaagcgatagagatgacgtcggagatggaagc 2272266  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 2272217 - 2272105
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagattgat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||   | ||   ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  2272217 cggagatggaagcgatagagatgacggcggagacggaagcaagaagcgat---aggattgagtgggagatgaaaattttgggggttaggtttagactgat 2272121  T
Q  355 tggaaaaatttgagtg 370  Q
    ||||||||| ||||||    
T  2272120 tggaaaaatctgagtg 2272105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 2272278 - 2272236
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  2272278 cggagatggaagcgatagagatgacggcggagacggaagcaag 2272236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 26840209 - 26840167
Alignment:
Q  412 tgttggaattggagaatgaattgagaatagggatatgcgtcgg 454  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  26840209 tgttcgaattggagaatgaattgagaatagggatatgcatcgg 26840167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 412 - 454
Target Start/End: Complemental strand, 26840642 - 26840600
Alignment:
Q  412 tgttggaattggagaatgaattgagaatagggatatgcgtcgg 454  Q
    |||| ||||||||||||||||||||||||||||||||| ||||    
T  26840642 tgttcgaattggagaatgaattgagaatagggatatgcatcgg 26840600  T

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Target: chr5 (Bit Score: 150; Significance: 5e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 39343930 - 39343753
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttcagatccgtaatggaggagacgtcggaggagtaaagcggtgga 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  39343930 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga 39343831  T
Q  217 gatcgatggagtagaatgacagcggaaactcaactcggcggagatggaagcgatagagatgacggcggagacggaagc 294  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||    
T  39343830 gatcgatggagtagaatgacagcggaaactgaactcgacggagatggaagcgatagagatgacgtcggagatggaagc 39343753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 39343704 - 39343592
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagattgat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||   | ||   ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  39343704 cggagatggaagcgatagagatgacggcggagacggaagcaagaagcgat---aggattgagtgggagatgaaaattttgggggttaggtttagactgat 39343608  T
Q  355 tggaaaaatttgagtg 370  Q
    ||||||||| ||||||    
T  39343607 tggaaaaatctgagtg 39343592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 39343765 - 39343723
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  39343765 cggagatggaagcgatagagatgacggcggagacggaagcaag 39343723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 39343584 - 39343555
Alignment:
Q  451 tcgggtgtgagagaaaagggagagatgtgt 480  Q
    ||||||||||||||||||||||||||||||    
T  39343584 tcgggtgtgagagaaaagggagagatgtgt 39343555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 150; Significance: 5e-79; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 117 - 294
Target Start/End: Complemental strand, 4009774 - 4009597
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttcagatccgtaatggaggagacgtcggaggagtaaagcggtgga 216  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  4009774 cctcgttgccggaggagacaaagtggcggctgatacaggaagtgttcgttaaaagttcagatccgtgatggaggagacgtcggaggagtaaaacggtgga 4009675  T
Q  217 gatcgatggagtagaatgacagcggaaactcaactcggcggagatggaagcgatagagatgacggcggagacggaagc 294  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||| ||||||    
T  4009674 gatcgatggagtagaatgacagcggaaactgaactcgacggagatggaagcgatagagatgacgtcggagatggaagc 4009597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 255 - 370
Target Start/End: Complemental strand, 4009548 - 4009436
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaagtgccaatgagaggattgagtgcgagatgaaaattttgggggttaggtttagattgat 354  Q
    |||||||||||||||||||||||||||||||||||||||||||   | ||   ||||||||||| |||||||||||||||||||||||||||||| ||||    
T  4009548 cggagatggaagcgatagagatgacggcggagacggaagcaagaagcgat---aggattgagtgggagatgaaaattttgggggttaggtttagactgat 4009452  T
Q  355 tggaaaaatttgagtg 370  Q
    ||||||||| ||||||    
T  4009451 tggaaaaatctgagtg 4009436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 4009609 - 4009567
Alignment:
Q  255 cggagatggaagcgatagagatgacggcggagacggaagcaag 297  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  4009609 cggagatggaagcgatagagatgacggcggagacggaagcaag 4009567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 407
Target Start/End: Original strand, 37907373 - 37907415
Alignment:
Q  365 tgagtgtgagaaactaaattttgggggagatgagagttgatcg 407  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  37907373 tgagtgtgataaactaaattttgggggagatgagagttgatcg 37907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 37907219 - 37907260
Alignment:
Q  307 gaggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  37907219 gaggattgagtgggagatgaaaattttgggggttaggtttag 37907260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 37907259 - 37907299
Alignment:
Q  308 aggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  37907259 aggattgagtgggagatgaaaattttgggggttaggtttag 37907299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 37907298 - 37907338
Alignment:
Q  308 aggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  37907298 aggattgagtgggagatgaaaattttgggggttaggtttag 37907338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 480
Target Start/End: Complemental strand, 4009428 - 4009399
Alignment:
Q  451 tcgggtgtgagagaaaagggagagatgtgt 480  Q
    ||||||||||||||||||||||||||||||    
T  4009428 tcgggtgtgagagaaaagggagagatgtgt 4009399  T

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Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 18290988 - 18291119
Alignment:
Q  357 gaaaaatttgagtgtgagaaactaaattttgggggagatgagagttgatcgaatatgttg--------gaattggagaatgaattgagaatagggatatg 448  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  18290988 gaaaaatttgagtgtgagaaactaaattttgggggagatgagagttgatcgaatatgttggaattggagaattggagaatgaattgagaatagggatatg 18291087  T
Q  449 cgtcgggtgtgagagaaaagggagagatgtgt 480  Q
      ||||||||||||||||||||||||| ||||    
T  18291088 tatcgggtgtgagagaaaagggagagaggtgt 18291119  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 18290784 - 18290841
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttc 174  Q
    |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  18290784 cctcgttgtcggaggagataaagtggcggctgatacaggaagtgttcgttaaaagttc 18290841  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 18290763 - 18290797
Alignment:
Q  76 gagatgaacctatgagaagatcctcgttgccggag 110  Q
    ||||||||||||||||||||||||||||| |||||    
T  18290763 gagatgaacctatgagaagatcctcgttgtcggag 18290797  T

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Target: scaffold0521 (Bit Score: 87; Significance: 2e-41; HSPs: 3)
Name: scaffold0521
Description:

Target: scaffold0521; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 357 - 480
Target Start/End: Original strand, 5133 - 5264
Alignment:
Q  357 gaaaaatttgagtgtgagaaactaaattttgggggagatgagagttgatcgaatatgttg--------gaattggagaatgaattgagaatagggatatg 448  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||    
T  5133 gaaaaatttgagtgtgagaaactaaatattgggggagatgagagttgatcgaatatgttggaattggagaattggagaatgaattgagaatagggatatg 5232  T
Q  449 cgtcgggtgtgagagaaaagggagagatgtgt 480  Q
      ||||||||||||||||||||||||| ||||    
T  5233 tatcgggtgtgagagaaaagggagagaggtgt 5264  T

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Target: scaffold0521; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 4929 - 4986
Alignment:
Q  117 cctcgttgccggaggagacaaagtggcggctaatacaggaagtgttcgttaaaagttc 174  Q
    ||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||    
T  4929 cctcgttgccggaggagacaaagtggcggctgatataggcagtgttcgttaaaagttc 4986  T

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Target: scaffold0521; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 110
Target Start/End: Original strand, 4908 - 4942
Alignment:
Q  76 gagatgaacctatgagaagatcctcgttgccggag 110  Q
    |||||||||||||||||||||||||||||||||||    
T  4908 gagatgaacctatgagaagatcctcgttgccggag 4942  T

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Target: scaffold0187 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 365 - 407
Target Start/End: Complemental strand, 31704 - 31662
Alignment:
Q  365 tgagtgtgagaaactaaattttgggggagatgagagttgatcg 407  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  31704 tgagtgtgataaactaaattttgggggagatgagagttgatcg 31662  T

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Target: scaffold0187; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 348
Target Start/End: Complemental strand, 31858 - 31817
Alignment:
Q  307 gaggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  31858 gaggattgagtgggagatgaaaattttgggggttaggtttag 31817  T

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Target: scaffold0187; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 31779 - 31739
Alignment:
Q  308 aggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  31779 aggattgagtgggagatgaaaattttgggggttaggtttag 31739  T

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Target: scaffold0187; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 308 - 348
Target Start/End: Complemental strand, 31818 - 31778
Alignment:
Q  308 aggattgagtgcgagatgaaaattttgggggttaggtttag 348  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  31818 aggattgagtgggagatgaaaattttgggggttaggtttag 31778  T

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