View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1357_low_31 (Length: 250)

Name: NF1357_low_31
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1357_low_31
NF1357_low_31
[»] chr3 (2 HSPs)
chr3 (1-208)||(40147481-40147688)
chr3 (8-194)||(8102258-8102444)
[»] chr4 (7 HSPs)
chr4 (57-196)||(7656265-7656404)
chr4 (49-193)||(7636908-7637052)
chr4 (55-191)||(7606086-7606222)
chr4 (49-153)||(7628532-7628636)
chr4 (53-196)||(7615098-7615241)
chr4 (193-246)||(566608-566661)
chr4 (193-225)||(5035628-5035660)
[»] chr7 (4 HSPs)
chr7 (49-196)||(8913717-8913864)
chr7 (71-182)||(8941878-8941989)
chr7 (53-158)||(8936258-8936363)
chr7 (194-231)||(7978108-7978145)
[»] chr8 (1 HSPs)
chr8 (64-165)||(15196319-15196420)
[»] chr6 (3 HSPs)
chr6 (49-194)||(6500343-6500488)
chr6 (85-138)||(11968807-11968860)
chr6 (197-246)||(12097396-12097445)
[»] scaffold0190 (1 HSPs)
scaffold0190 (49-138)||(4300-4389)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 40147688 - 40147481
Alignment:
Q  1 tagcgtggtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40147688 tagcgtggtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgt 40147589  T
Q  101 gaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcaaactgccacagtttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  40147588 gaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcgaactgccacaggttc 40147489  T
Q  201 tctccatc 208  Q
    || |||||    
T  40147488 tccccatc 40147481  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 194
Target Start/End: Original strand, 8102258 - 8102444
Alignment:
Q  8 gtaccaaactgattttgcaaaccttaaactcacactaattagacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaag 107  Q
    |||||||||  ||||||||||  |||||| |||  ||||| || ||||  | ||||||  || | |||||||||||||||||||||||||||||||||||    
T  8102258 gtaccaaaccaattttgcaaattttaaacccacgttaattggatacaaagttcatgaaaacaggatcatttcccattgcctccaaaatcttgtgaggaag 8102357  T
Q  108 acacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttattttatttccactgcaaactgccac 194  Q
    ||| ||||||| |||||| |||||||||||| ||||||||||||||| || || |||||||  |||||||||||||| |||||||||    
T  8102358 acatacttgaaggtccatactaccttcttctattccagcaaatacagcaaacagtccactttgtttatttccactgcgaactgccac 8102444  T

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Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 57 - 196
Target Start/End: Complemental strand, 7656404 - 7656265
Alignment:
Q  57 atccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagta 156  Q
    ||||||||| ||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||||| ||||||||||  ||  |    
T  7656404 atccatgaactcaggatcatttcccattgcctccaaaatcttgtaaggaagacacacttgaaggtcaatgctagcttcttctattccagcaaaggcacaa 7656305  T
Q  157 atcattccacttattttatttccactgcaaactgccacag 196  Q
    | ||||||| || ||||||||||||| | |||||||||||    
T  7656304 accattccatttgttttatttccactacgaactgccacag 7656265  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 193
Target Start/End: Original strand, 7636908 - 7637052
Alignment:
Q  49 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 148  Q
    ||||||||||||||||| |   |||||||||||||| ||||||||||||   |||||||||| ||||||| ||| || |||||||||||| |||| ||||    
T  7636908 gacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctatactaccttcttctattccggcaa 7637007  T
Q  149 atacagtaatcattccacttattttatttccactgcaaactgcca 193  Q
    |||| ||||| | |||| ||||||||| |||||| | ||||||||    
T  7637008 ataccgtaataagtccatttattttatatccactacgaactgcca 7637052  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 191
Target Start/End: Original strand, 7606086 - 7606222
Alignment:
Q  55 acatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacag 154  Q
    ||||||||||| |   ||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||| || |||||||||||| ||||||||||||||     
T  7606086 acatccatgaaatgtgggtcacttcccattgcctccaaaaccttgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacat 7606185  T
Q  155 taatcattccacttattttatttccactgcaaactgc 191  Q
    | |  |||||| ||||||||| |||||| | ||||||    
T  7606186 ttacaattccatttattttatatccactacgaactgc 7606222  T

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Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 7628532 - 7628636
Alignment:
Q  49 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 148  Q
    |||||||||||||  || | | ||||||||||||||||||||||||||| || ||||||||| | ||||| ||| || |||||||||||| |||||||||    
T  7628532 gacacaacatccacaaattgagggtcatttcccattgcctccaaaatctcgtaaggaagacagatttgaaggtcaatactaccttcttctattccagcaa 7628631  T
Q  149 ataca 153  Q
    |||||    
T  7628632 ataca 7628636  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 196
Target Start/End: Original strand, 7615098 - 7615241
Alignment:
Q  53 caacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatac 152  Q
    ||||||||||||| | | |||||||||||||||||||||||||||  || | |||||| |||||||  || || |||||||||||| |||||||||| ||    
T  7615098 caacatccatgaattgagggtcatttcccattgcctccaaaatctcatgtgaaagacaaacttgaagatctatactaccttcttctattccagcaaaaac 7615197  T
Q  153 agtaatcattccacttattttatttccactgcaaactgccacag 196  Q
     ||||| | |||| ||  ||||| |||||| | |||||||||||    
T  7615198 cgtaataagtccatttcctttatatccactacgaactgccacag 7615241  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 566661 - 566608
Alignment:
Q  193 acagtttctctccatcaccgaccgtcttcgattttcacttgctatctgtactcc 246  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  566661 acagtttctctccatcaccgacagtcttcgattttcacttgctatctgtactcc 566608  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 225
Target Start/End: Complemental strand, 5035660 - 5035628
Alignment:
Q  193 acagtttctctccatcaccgaccgtcttcgatt 225  Q
    ||||||||||||||||||| |||||||||||||    
T  5035660 acagtttctctccatcaccaaccgtcttcgatt 5035628  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 196
Target Start/End: Complemental strand, 8913864 - 8913717
Alignment:
Q  49 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 148  Q
    ||||||||||||||||| |   |||||||||||||| ||||||||||||   |||||||||| ||||||| ||| ||  ||||||||||| ||||  |||    
T  8913864 gacacaacatccatgaaattggggtcatttcccattccctccaaaatctcacgaggaagacaaacttgaaggtctataataccttcttctattccgacaa 8913765  T
Q  149 atacagtaatcattccacttattttatttccactgcaaactgccacag 196  Q
    |||| ||||| | |||| ||||||||| |||||| | |||||||||||    
T  8913764 atactgtaataagtccatttattttatatccactacgaactgccacag 8913717  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 8941989 - 8941878
Alignment:
Q  71 ggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattccacttat 170  Q
    ||||| |||||||||||||||||| || || ||||||||| ||||||| ||| || |||||||||||| |||||||||||||| | |  |||||| ||||    
T  8941989 ggtcacttcccattgcctccaaaacctcgtaaggaagacatacttgaaggtcaatactaccttcttctattccagcaaatacatttacaattccatttat 8941890  T
Q  171 tttatttccact 182  Q
    ||||| ||||||    
T  8941889 tttatatccact 8941878  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 8936363 - 8936258
Alignment:
Q  53 caacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatac 152  Q
    ||||||||||||| | | |||||||||||||||||||||||||||  |  |||||||| ||||||| ||| || |||||||||||| |||| ||||||||    
T  8936363 caacatccatgaattgagggtcatttcccattgcctccaaaatctcatatggaagacaaacttgaaggtcaatactaccttcttctattccggcaaatac 8936264  T
Q  153 agtaat 158  Q
     |||||    
T  8936263 tgtaat 8936258  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 7978145 - 7978108
Alignment:
Q  194 cagtttctctccatcaccgaccgtcttcgattttcact 231  Q
    |||||||||||||||||| |||||||| ||||||||||    
T  7978145 cagtttctctccatcaccaaccgtcttagattttcact 7978108  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 15196420 - 15196319
Alignment:
Q  64 aagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaaatacagtaatcattc 163  Q
    |||||| |||||||||||||  |||||||||||||||  ||||||||||||| ||||||||| || ||||||||||| |||||||| ||| ||||| |||    
T  15196420 aagtcagggtcatttcccatgacctccaaaatcttgtatggaagacacacttcaaagtccatacttccttcttctttaccagcaaacacactaatctttc 15196321  T
Q  164 ca 165  Q
    ||    
T  15196320 ca 15196319  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 194
Target Start/End: Original strand, 6500343 - 6500488
Alignment:
Q  49 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttcttttccagcaa 148  Q
    |||||| |||||||||| | | ||||||  | |||||| |||||| |||||| ||||||||| ||||||| ||| || ||||||| ||||||||||||||    
T  6500343 gacacagcatccatgaaattagggtcataactcattgcttccaaagtcttgtaaggaagacaaacttgaaggtctatactaccttattcttttccagcaa 6500442  T
Q  149 atacagtaatcattccacttattttatttccactgcaaactgccac 194  Q
    ||||| ||| ||| |||  |||||||||| |||||| || ||||||    
T  6500443 atacactaaccataccatctattttatttacactgcgaaatgccac 6500488  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 11968807 - 11968860
Alignment:
Q  85 gcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttct 138  Q
    |||||||||||||||| |||||||||||||| |||||| || ||||||||||||    
T  11968807 gcctccaaaatcttgtaaggaagacacacttcaaagtctatactaccttcttct 11968860  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 246
Target Start/End: Complemental strand, 12097445 - 12097396
Alignment:
Q  197 tttctctccatcaccgaccgtcttcgattttcacttgctatctgtactcc 246  Q
    ||||||| |||||  ||||||||||||||||||||| |||||||||||||    
T  12097445 tttctcttcatcagagaccgtcttcgattttcacttactatctgtactcc 12097396  T

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Target: scaffold0190 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 4300 - 4389
Alignment:
Q  49 gacacaacatccatgaagtcatggtcatttcccattgcctccaaaatcttgtgaggaagacacacttgaaagtccatgctaccttcttct 138  Q
    |||||||||||||| || ||| | |||||||  |||||||||||||| |    ||||||||| |||| || |||||||||||| ||||||    
T  4300 gacacaacatccataaactcaggatcatttctaattgcctccaaaatttcacaaggaagacatacttcaaggtccatgctaccatcttct 4389  T

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