View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_32 (Length: 250)
Name: NF1357_low_32
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_32 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 31770090 - 31770323
Alignment:
| Q |
26 |
gtaattaagtatatcatgttatagaatgnnnnnnnnnttacaaaacttttccaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgca |
125 |
Q |
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| T |
31770090 |
gtaattaagtatatcatgttatagaatgaaaaaaaaattacaaaacttttccaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgca |
31770189 |
T |
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| Q |
126 |
agagaaacaaaaacacttcatattcattcctataaat---------attaaatgactgcaaatttcaaaactgcacatttcttaccaaaggaaagctcta |
216 |
Q |
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| T |
31770190 |
agagaaacaaaaacacttcatattcattcctataaatcagatgtcaattaaatgactgcaaatttcaaaactgcacatttcttaccaaaggaaagctcta |
31770289 |
T |
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| Q |
217 |
acgtagaatctattttgatagaaccatctagtaa |
250 |
Q |
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| T |
31770290 |
acgtagaatctattttgatagaaccatctagtaa |
31770323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 26 - 250
Target Start/End: Original strand, 7607530 - 7607763
Alignment:
| Q |
26 |
gtaattaagtatatcatgttatagaatgnnnnnnnnnttacaaaacttttccaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgca |
125 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7607530 |
gtaattaagtatatcatgttatagaatgaaaaaaaaattacaaaactttttcaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgta |
7607629 |
T |
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| Q |
126 |
agagaaacaaaaacacttcatattcattcctataaat---------attaaatgactgcaaatttcaaaactgcacatttcttaccaaaggaaagctcta |
216 |
Q |
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| T |
7607630 |
agagaaacaaaaacacttcatattcattcctataaatcagatgtcaattaaatgacttcaaatttcaaaactgcacatttcttaccaaaggaaagctcta |
7607729 |
T |
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| Q |
217 |
acgtagaatctattttgatagaaccatctagtaa |
250 |
Q |
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| T |
7607730 |
acgtagaatctattttgatagaaccatctagtaa |
7607763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 196
Target Start/End: Complemental strand, 14185365 - 14185191
Alignment:
| Q |
26 |
gtaattaagtatatcatgttatagaatgnnnnnnnnntta-caaaacttttccaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgc |
124 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
14185365 |
gtaattaagtatatcatgttatagaatgacaaaaaaattaacaaaacttttccaaagtaaccatgttagcagatgtatcagtatagtatgaaattttttt |
14185266 |
T |
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| Q |
125 |
aagagaaacaaaaacacttcatattcattcctataaat---------attaaatgactgcaaatttcaaaactgcacattt |
196 |
Q |
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| T |
14185265 |
aagag------aaacacttcatattcattcctataaatcagatgtcaattaaatgactgcaaatttcaaaactgcacattt |
14185191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 14185087 - 14185029
Alignment:
| Q |
192 |
catttcttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaa |
250 |
Q |
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| T |
14185087 |
catttcttaccaaaggaaagctctaacgtagaatctattttgatagaaccatctagtaa |
14185029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 30113159 - 30113294
Alignment:
| Q |
26 |
gtaattaagtatatcatgttatagaatgnnnnnnnnnttacaaaacttttccaaagtaaccatattagcatatgtatcagtatagtatgaaatttttgca |
125 |
Q |
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|||||||||||||| |||||| |||||| ||||||||| |||||||||| |||| ||||||| |||||||| || || || ||||||| ||| |
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| T |
30113159 |
gtaattaagtatataatgttaaagaatgaaaccaaatttacaaaacctttccaaagttaccaaattagcagatgtatcaatacagaataaaatttt-gca |
30113257 |
T |
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| Q |
126 |
agagaaacaaaaacacttcatattcattcctataaat |
162 |
Q |
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|||||||||||||||||| |||||||| ||||||||| |
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| T |
30113258 |
agagaaacaaaaacacttaatattcatacctataaat |
30113294 |
T |
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