View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_4 (Length: 527)
Name: NF1357_low_4
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 11 - 499
Target Start/End: Complemental strand, 14341359 - 14340868
Alignment:
| Q |
11 |
cagagaaggaaccatagagaatttgtttagcaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagagggatcatcaca |
110 |
Q |
| |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
14341359 |
cagagaaggaaccagagagaatttgtttaacaatccattcatttgctgcttgggagtagtgtataccatcccaactgatatatgtagaggggtcatcaca |
14341260 |
T |
|
| Q |
111 |
tgcaatgccataaattgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattccca |
210 |
Q |
| |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14341259 |
tgcaaagccataaaatgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattcata |
14341160 |
T |
|
| Q |
211 |
aaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaagataacaaaaacttaattgaac-- |
308 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14341159 |
aaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatcatttaaagataacaaaaacttaattgaacat |
14341060 |
T |
|
| Q |
309 |
-attaccttggctccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttgactaatggaaacattccccttagctgaaa |
407 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
14341059 |
aattaccttggctccttgcattgctgataagtgtatatttgactgtgtaaacatcaacatatgtaaatttggctaatggaaacattctccttagctgaaa |
14340960 |
T |
|
| Q |
408 |
cacttggtcttttagctgcctgttatatccctgagcaagctcgttgtgaagtttaacacagccattggcatccaagttacccttctcgttct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14340959 |
cacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagttactcttctcgttct |
14340868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 87 - 499
Target Start/End: Complemental strand, 3602400 - 3601988
Alignment:
| Q |
87 |
gatatatgtagagggatcatcacatgcaatgccataaattgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttcca |
186 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3602400 |
gatatatgtagaggaatcatcacatgcaatgccataaactgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttcca |
3602301 |
T |
|
| Q |
187 |
caacaaaattccaatggattcccaaaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgataatttaaa |
286 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3602300 |
caacaaaattccaatggattcacaaaacctgccacaaatcatgcaagcataaaagttaaaacttaattgtgcacattcaataagcaattgatattttaaa |
3602201 |
T |
|
| Q |
287 |
gataacaaaaacttaattgaacattaccttggctccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttgactaatgg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
3602200 |
gataacaaaaacttaattgaacattaccttggttccttgcattgctgataagtgtatatttgaccgtgtaaacatcaacatatgtaaatttggctaatgg |
3602101 |
T |
|
| Q |
387 |
aaacattccccttagctgaaacacttggtcttttagctgcctgttatatccctgagcaagctcgttgtgaagtttaacacagccattggcatccaagtta |
486 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
3602100 |
aaacattctccttagctgaaacacttggtcttttagctgcctgttatattcctgagcaagctcgttgtgaggtttaacacagccattggcatccaagtta |
3602001 |
T |
|
| Q |
487 |
cccttctcgttct |
499 |
Q |
| |
|
||||||||||||| |
|
|
| T |
3602000 |
cccttctcgttct |
3601988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 303 - 493
Target Start/End: Complemental strand, 3569179 - 3568990
Alignment:
| Q |
303 |
ttgaacattaccttggctccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttgactaatggaaacattccccttagc |
402 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| |||||| | ||||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||||| |
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|
| T |
3569179 |
ttgaacattaccctggctccttgcgttgctgataagtttctattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctccttagc |
3569080 |
T |
|
| Q |
403 |
tgaaacacttggtcttttagctgcctgttatatccctgagcaagctcgttgtgaagtttaacacagccattggcatccaagttacccttct |
493 |
Q |
| |
|
|||||| ||| |||||||||||||||||| ||| |||||||||||||||||||| |||||| ||| ||||||||||||||||| ||||||| |
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|
| T |
3569079 |
tgaaacgctt-gtcttttagctgcctgttctattcctgagcaagctcgttgtgaggtttaaaacaaccattggcatccaagttccccttct |
3568990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 303 - 493
Target Start/End: Complemental strand, 3591244 - 3591052
Alignment:
| Q |
303 |
ttgaacattaccttggc--tccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttgactaatggaaacattcccctta |
400 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |
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|
| T |
3591244 |
ttgaacattaccttggtattccttgcgttgctgataagtttatattttactgtgtaaacatcaacatatgtaaatttggctaatggaaactttctcctta |
3591145 |
T |
|
| Q |
401 |
gctgaaacacttggtcttttagctgcctgttatatccctgagcaagctcgttgtgaagtttaacacagccattggcatccaagttacccttct |
493 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| | |||||||||| |||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
3591144 |
gctgaaacacttggtcttttagctaccagttatattcttgagcaagcttattgtgaggtttaacacagccattggcatctaagttacccttct |
3591052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 3569570 - 3569487
Alignment:
| Q |
177 |
gtaacttccacaacaaaattccaatggattcccaaaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcac |
260 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||| |||| ||||| |||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
3569570 |
gtaacttccacagcaaaattccaatggattcacaagacctaccacaaatcatgcaagattaaaaattaaaacttaattgtgcac |
3569487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 3602453 - 3602399
Alignment:
| Q |
11 |
cagagaaggaaccatagagaatttgtttagcaatccattcatttgctgcttggga |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
3602453 |
cagagaaggaaccatagagaatttgtttagcaatccattcctttgctgcttggga |
3602399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 3577296 - 3577213
Alignment:
| Q |
177 |
gtaacttccacaacaaaattccaatggattcccaaaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcac |
260 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| ||||||| |||||| ||| |||||| |||||| |||| |||||| ||||||| |
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|
| T |
3577296 |
gtaacttccacagcaaaatttcaatggatttacaaaaccagccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3577213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 177 - 260
Target Start/End: Complemental strand, 3591637 - 3591554
Alignment:
| Q |
177 |
gtaacttccacaacaaaattccaatggattcccaaaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcac |
260 |
Q |
| |
|
|||| ||||||| || ||| |||||||||| |||||||||||||| ||| |||||| |||||| |||| |||||| ||||||| |
|
|
| T |
3591637 |
gtaatttccacagaaatatttcaatggattcacaaaacctgccacaaatcgtgcaagaataaaaattaacacttaactgtgcac |
3591554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 303 - 493
Target Start/End: Complemental strand, 1409587 - 1409397
Alignment:
| Q |
303 |
ttgaacattaccttggctccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttgactaatggaaacattccccttagc |
402 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||| |||||||| ||||||| ||||||||||||||||| ||| ||||||||||| ||| ||||||| |
|
|
| T |
1409587 |
ttgaacattaccttggctctttgcattgctaataagtttatatttggctgtgtacacatcaacatatgtaaacttggctaatggaaactttcgccttagc |
1409488 |
T |
|
| Q |
403 |
tgaaacacttggtcttttagctgcctgttatatccctgagcaagctcgttgtgaagtttaacacagccattggcatccaagttacccttct |
493 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| | ||||||||||| |||||| || |||||||||||| | |||||||||||||||||| |
|
|
| T |
1409487 |
tgaaacactttgtcttttagctgcctgttatattcttgagcaagctcattgtgaggtataacacagccatagacatccaagttacccttct |
1409397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 1410059 - 1409817
Alignment:
| Q |
11 |
cagagaaggaaccatagagaatttgtttagcaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatatgtagagggatcatcaca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||| || |||| | |||| |||| |||||| |
|
|
| T |
1410059 |
cagagaaggaaccatagagaatttgtttagcaacccattgatttgcagcttgagagtagtgtataccatcccaactaatatgtttagaaggattatcaca |
1409960 |
T |
|
| Q |
111 |
tgcaatgccataaattgttccattttttatggacttcttcccacaataatgtatttcgttaccttggtaacttccacaacaaaattccaatggattccca |
210 |
Q |
| |
|
|| | ||||||||| |||||||||| |||||| |||| ||||| ||| ||| | || ||| | |||||||||||| |||||||||||||||||| || |
|
|
| T |
1409959 |
tggattgccataaactgttccatttattatggccttcaacccac---aatttatgtggtaaccatagtaacttccacagcaaaattccaatggattcaca |
1409863 |
T |
|
| Q |
211 |
aaacctgccacatatcatgcaagcataaaagttaaaacttaattgtgcac |
260 |
Q |
| |
|
|||||||||||| || ||||||| | ||||||||| ||||||||||| |
|
|
| T |
1409862 |
aaacctgccacaaat----caagcatgagagttaaaacctaattgtgcac |
1409817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 378
Target Start/End: Complemental strand, 1412630 - 1412558
Alignment:
| Q |
306 |
aacattaccttggctccttgcattgctcataagtgtatatttgactgtgtaaacatcaacatatgtaaatttg |
378 |
Q |
| |
|
||||| |||| |||||||||||||||| || ||| ||||||| || |||| | ||||||||||||||||||| |
|
|
| T |
1412630 |
aacatcacctcggctccttgcattgctgattagttcatatttggctttgtacatatcaacatatgtaaatttg |
1412558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 1417873 - 1417792
Alignment:
| Q |
12 |
agagaaggaaccatagagaatttgtttagcaatccattcatttgctgcttgggagtagtgtataccatcccagctgatatat |
93 |
Q |
| |
|
||||||||| |||| || |||| || ||||||| ||| |||||| |||||||||||||||||||||||| || |||||| |
|
|
| T |
1417873 |
agagaaggatccatggatgattttttcagcaatcaattggtttgctctttgggagtagtgtataccatcccaactaatatat |
1417792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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