View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_5 (Length: 478)
Name: NF1357_low_5
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 152 - 450
Target Start/End: Complemental strand, 4602518 - 4602220
Alignment:
| Q |
152 |
gttagaatgaggtagtaaggattaaggaacgcaacttttccattatttgattgatttataactctcatcatcattgaattaaataaaatataatgagatt |
251 |
Q |
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| T |
4602518 |
gttagaatgaggtagtaaggattaaggaacgcaacttttccattatttgattgatttataactctcatcatcattaaattaaataaaatataatgagatt |
4602419 |
T |
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| Q |
252 |
tattaaaggaggctaatttacttatacacagagagcatttaaaaggttagaaaaggtggggaaatcccctaaattctaaaattgtaagcttctttatgat |
351 |
Q |
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| T |
4602418 |
tattaaaggaggctaatttacttatacacatagagcatttaaaaggttagaaaaggtggggaaatcccctaaattctaaaattttaagcttctttatgat |
4602319 |
T |
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| Q |
352 |
gatatctattcatttaatagtgaaaaatgaatttatacagtgcaatactaatttgctcctattagacattgactnnnnnnnntatattagcttctttat |
450 |
Q |
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| T |
4602318 |
gatgtctattcatataatagtgaaaaatgaatttatacagtgcaagactaatttgctcctattagacattgactaaaaaaaatatattagcttctttat |
4602220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 10 - 159
Target Start/End: Complemental strand, 4603300 - 4603151
Alignment:
| Q |
10 |
agatgaagaaaatgaggtgtattggtattggaaattggaaacgtggaatattggtcatgcatgcacccaacttttacatagaaagagtcatgtgaaacaa |
109 |
Q |
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| T |
4603300 |
agatgaagaaaatgaggtgtattggtattggaaattggaaacgtggaatattggtcatgcatgcacccaacttttacatagaaagagtcatgtgaaacaa |
4603201 |
T |
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| Q |
110 |
tgtccttagacacttgtttaaggatccagtatccaaactaatgttagaat |
159 |
Q |
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| T |
4603200 |
tgcccttagacacttgtttaaggattcagtatccaaactaatgttagaat |
4603151 |
T |
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