View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_6 (Length: 435)
Name: NF1357_low_6
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 33 - 411
Target Start/End: Original strand, 27494496 - 27494874
Alignment:
| Q |
33 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgttttgaatggccataaaatccttctagtccaatttata |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27494496 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgtgttgaatggccataaaatccttctagtccaatttata |
27494595 |
T |
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| Q |
133 |
gtcgattgaatacatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27494596 |
gtcgattgaatgcatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
27494695 |
T |
|
| Q |
233 |
gcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
332 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27494696 |
gcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
27494795 |
T |
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| Q |
333 |
gttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
411 |
Q |
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| T |
27494796 |
gttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
27494874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 33 - 411
Target Start/End: Original strand, 27501154 - 27501532
Alignment:
| Q |
33 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgttttgaatggccataaaatccttctagtccaatttata |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27501154 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgtgttgaatggccataaaatccttctagtccaatttata |
27501253 |
T |
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| Q |
133 |
gtcgattgaatacatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501254 |
gtcgattgaatgcatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
27501353 |
T |
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| Q |
233 |
gcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
332 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501354 |
gcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
27501453 |
T |
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| Q |
333 |
gttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
411 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501454 |
gttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
27501532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 33 - 411
Target Start/End: Original strand, 27515946 - 27516324
Alignment:
| Q |
33 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgttttgaatggccataaaatccttctagtccaatttata |
132 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27515946 |
agaagcaaagtttacacaaagaacttggtggttcctaatggaatgaacttcatactctggtgtgttgaatggccataaaatccttctagtccaatttata |
27516045 |
T |
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| Q |
133 |
gtcgattgaatacatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
232 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516046 |
gtcgattgaatgcatgaaggtaaagtaattcttaatgttatacctaagcaagttaaatggtatagtagtattaattcatacccctctaactagtgtctaa |
27516145 |
T |
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| Q |
233 |
gcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
332 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516146 |
gcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaatagtttttaaatatc |
27516245 |
T |
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| Q |
333 |
gttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
411 |
Q |
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| T |
27516246 |
gttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaa |
27516324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 27519202 - 27519238
Alignment:
| Q |
32 |
cagaagcaaagtttacacaaagaacttggtggttcct |
68 |
Q |
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|||||||||||| ||||| |||||||||||||||||| |
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| T |
27519202 |
cagaagcaaagtctacaccaagaacttggtggttcct |
27519238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 403 - 435
Target Start/End: Complemental strand, 30365946 - 30365914
Alignment:
| Q |
403 |
agaaaagaatactaccgttttgaagaatcctca |
435 |
Q |
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| T |
30365946 |
agaaaagaatactaccgttttgaagaatcctca |
30365914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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