View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1357_low_8 (Length: 417)
Name: NF1357_low_8
Description: NF1357
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1357_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 52874774 - 52874456
Alignment:
| Q |
14 |
atatagaaggtagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacact |
113 |
Q |
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| T |
52874774 |
atatagaaggtagtcaaagatgaaaggaaaggcatagtagcattcatgatgaggtaattcattgattataaatttccaatttaagcatcgttaaaacact |
52874675 |
T |
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| Q |
114 |
agttaaatgaaagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataa |
213 |
Q |
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| T |
52874674 |
agttaaatgaaagtgtaactttacatcatgatataccaaatgatttaaaagtcactccataacatatttaagaaactatcataaactagtacaaatataa |
52874575 |
T |
|
| Q |
214 |
ggttacatgaaaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttcc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874574 |
ggttacatgaaaaaaccttgggagataattcattatagcgttcatcaagctgatcacgagcagttaagtctgaccataacgaagcacatataactgttcc |
52874475 |
T |
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| Q |
314 |
gacagacatcaaccacaaa |
332 |
Q |
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| T |
52874474 |
gacagacatcaaccacaaa |
52874456 |
T |
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