View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13580_high_2 (Length: 366)
Name: NF13580_high_2
Description: NF13580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13580_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 43 - 270
Target Start/End: Complemental strand, 7309837 - 7309613
Alignment:
| Q |
43 |
aacttgtttggttaatgtacttattttatagagtctattttcacccgagctaaaactccattgctctatatgagttattttattgatttctgtcaatgtt |
142 |
Q |
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| T |
7309837 |
aacttgtttgtttattgtactaattttatagagcctattttcacccgagctaaaactccattgctatttatgagttattttattgatgtctgtttatgtt |
7309738 |
T |
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| Q |
143 |
gaacttattatctttatattgatatacatatgcaacattaatgtatgataatttcataagtgtaatttattgttaaaaattgttgttgttttataaccaa |
242 |
Q |
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| T |
7309737 |
aaacgtat---ctttatattgatatacatatgcaacattaatgtatgatagtttgataagtgtaatttattgttaaaaattgttgttgttctataaccaa |
7309641 |
T |
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| Q |
243 |
aaataacaaattgcaaatcataccaaat |
270 |
Q |
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| T |
7309640 |
aaataacaaattgtaaatcgtaccaaat |
7309613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 7332080 - 7332167
Alignment:
| Q |
151 |
tatctttatattgatatacatatgcaacattaatgtatgataatttcataagtgtaatttattgttaaaaattgttgttgttttataaccaaa |
243 |
Q |
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| T |
7332080 |
tatctttatattgatata--tatgcaacattaatgtatgataatttgataagtgtaatttattgttaaaaattgt---tgttttataaccaaa |
7332167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 295 - 349
Target Start/End: Complemental strand, 7300869 - 7300815
Alignment:
| Q |
295 |
gtcaagttactaatgcatccgaaaatgttgggtaaacattaggctatgtttgaaa |
349 |
Q |
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| T |
7300869 |
gtcatgttactaatgcatccgaaaatgttgggtaaacattaggctatgtttgaaa |
7300815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 7330124 - 7330181
Alignment:
| Q |
43 |
aacttgtttggttaatgtacttattttatagagtctattttcacccgagctaaaactcca |
102 |
Q |
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| T |
7330124 |
aacttgtttggttattgtactcattttatag--tctattttcacccgagctaaaactcca |
7330181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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