View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13580_low_1 (Length: 518)
Name: NF13580_low_1
Description: NF13580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13580_low_1 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: scaffold0060 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 102 - 502
Target Start/End: Complemental strand, 63924 - 63526
Alignment:
| Q |
102 |
tttgatcgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggtt |
201 |
Q |
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| T |
63924 |
tttgattgatttgaagagattttaggaggctaaaggggttgttgagaagatggttttgaaaggtttagtggtgagttatgattcttttaagggtttggtt |
63825 |
T |
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| Q |
202 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagac |
301 |
Q |
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| T |
63824 |
ttggggttttgtagagagggtttggttgaggatgttgattggggtgttaggagtatggttgggatggtgggatttgttgtta----ggggatgtggagtc |
63729 |
T |
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| Q |
302 |
aaattgttaagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg---nn |
398 |
Q |
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| T |
63728 |
aaattgttaagtttg-tgttgtttctagtgatgtttgtgtttctcttgatacgattttggatggtcatgatgattgaaaaatatgatgttggtggttttt |
63630 |
T |
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| Q |
399 |
nnnnnnncaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
498 |
Q |
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| T |
63629 |
tttttttcaatgtacattattatatagccaataacatgttttgattaatttgattggaaggaaaaagaataattattcggctatatcgtaagtgtgatct |
63530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 30 - 364
Target Start/End: Original strand, 30300928 - 30301259
Alignment:
| Q |
30 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctcacgagagttcttatcaacatattttgtatgatttgatcgatttgaagagattttaggag |
129 |
Q |
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| T |
30300928 |
ggttttggaagatgtgatgatgaggaatgggtgttatcctaatgagagttcttatcagcatgtgttgtatggtttgattgatttgaagagatttgaggag |
30301027 |
T |
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| Q |
130 |
gctaaaggggttgttgagaagatggttttgaaaggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagagggtttggttg |
229 |
Q |
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| T |
30301028 |
gctaaaggggttgttgagaagatggttttgaagggttttgtggtgagttatgattcttttaagggtttggttttggggttttgtagagaagggttgattg |
30301127 |
T |
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| Q |
230 |
aggatgttgattggggtgttaggagtgtggttaggatggtgggatttgttgttaagatggggatgtggagacaaattgttaagtttgttgttgtttctag |
329 |
Q |
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| T |
30301128 |
aggaagttgattggggtgttaggagtatggttagga---tgggttttgttcctaggatggggatgtggagaccaattgttagatgtattgttgtttctag |
30301224 |
T |
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| Q |
330 |
tgatgtttgtgtttctcttgatacgattttggatt |
364 |
Q |
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| T |
30301225 |
agatgttagtgtttcttttgataagattttggatt |
30301259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 310 - 396
Target Start/End: Original strand, 30302187 - 30302273
Alignment:
| Q |
310 |
aagtttgttgttgtttctagtgatgtttgtgtttctcttgatacgattttggattgtcatgatgattgaaaaatatgatattggtgg |
396 |
Q |
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| T |
30302187 |
aagtgtgttgttgctgttagtgatgtttgtgtttctcttgatacgattttggatagtcatgatgattgaaaaatatgatgttggtgg |
30302273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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