View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13580_low_6 (Length: 263)
Name: NF13580_low_6
Description: NF13580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13580_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 1701676 - 1701925
Alignment:
| Q |
1 |
ccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaa |
100 |
Q |
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| T |
1701676 |
ccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaataaaa |
1701775 |
T |
|
| Q |
101 |
gtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaa |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
1701776 |
gtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcacttcagttca |
1701875 |
T |
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| Q |
201 |
tggttacaaatattatcttgtgtttgttgatcattttactcaatattctt |
250 |
Q |
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| T |
1701876 |
tggttacaaatattatcttgtgtttgttgatcattttactcgatattctt |
1701925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 181249 - 181434
Alignment:
| Q |
1 |
ccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaa |
100 |
Q |
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| T |
181249 |
ccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaataaaa |
181348 |
T |
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| Q |
101 |
gtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
186 |
Q |
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| T |
181349 |
gtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 5400484 - 5400652
Alignment:
| Q |
73 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
172 |
Q |
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| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
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| Q |
173 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
241 |
Q |
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| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactc |
5400652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 3541459 - 3541627
Alignment:
| Q |
73 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
172 |
Q |
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||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
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| Q |
173 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
241 |
Q |
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| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactc |
3541627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 31098805 - 31098901
Alignment:
| Q |
144 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
240 |
Q |
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| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttact |
31098901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 240
Target Start/End: Complemental strand, 26592600 - 26592523
Alignment:
| Q |
163 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
240 |
Q |
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| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttact |
26592523 |
T |
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