View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13581_high_10 (Length: 230)
Name: NF13581_high_10
Description: NF13581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13581_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 41659680 - 41659469
Alignment:
| Q |
1 |
gtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcatt |
100 |
Q |
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| T |
41659680 |
gtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacacacagagattctacatt |
41659581 |
T |
|
| Q |
101 |
ttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaa |
200 |
Q |
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| T |
41659580 |
ttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagggcacagag |
41659481 |
T |
|
| Q |
201 |
taattatgaaac |
212 |
Q |
| |
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|||||||||||| |
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| T |
41659480 |
taattatgaaac |
41659469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 41686585 - 41686465
Alignment:
| Q |
91 |
attctgcattttcaagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaa |
190 |
Q |
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| T |
41686585 |
attctacatcttcaagagaagtttgaattggagagactaacgaggtttcaagctgaggaagatttgagaaaaagagaggaactttgtgaaagagggataa |
41686486 |
T |
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| Q |
191 |
gagcacagaataattatgaaa |
211 |
Q |
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| T |
41686485 |
gagcacaaaataattatgaaa |
41686465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 41709032 - 41708843
Alignment:
| Q |
22 |
tttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttgg |
121 |
Q |
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| T |
41709032 |
tttctgacagaacagtttgatagaattgaagaggttttagtgagtagatataagagactagaaaatgagattatagatcttcaagagaaggttgaaatgg |
41708933 |
T |
|
| Q |
122 |
agagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaa |
211 |
Q |
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| T |
41708932 |
agaaaaaaacgaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataattatgaaa |
41708843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 41718122 - 41717915
Alignment:
| Q |
4 |
tcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttc |
103 |
Q |
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| T |
41718122 |
tcggtgttgcgaacagcatttctgacagaagaatttgatagaattgaagggattttagtgagtagatataagagactagaaaatgagattatagatcttc |
41718023 |
T |
|
| Q |
104 |
aagagaagtttgacttggagagactgatgaggtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataa |
203 |
Q |
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| T |
41718022 |
aagagaaggttgaaatggagaaaaaaacaaggtttcaagccgaggaagatttgagaaaaagagaggaactgtgtgaaaaagggaaaagagcacaaaataa |
41717923 |
T |
|
| Q |
204 |
ttatgaaa |
211 |
Q |
| |
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|||||||| |
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| T |
41717922 |
ttatgaaa |
41717915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 47 - 210
Target Start/End: Original strand, 41687703 - 41687866
Alignment:
| Q |
47 |
ttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttgacttggagagactgatgaggtttcaagctga |
146 |
Q |
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||||| |||||||||||| |||| || ||| ||| || || | ||||| ||| |||||||||||||||| |||| | ||| | |||||||||| ||| |
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| T |
41687703 |
ttgaagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttgaaatggaaaaactaacaaggtttcaagttga |
41687802 |
T |
|
| Q |
147 |
agaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaa |
210 |
Q |
| |
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|||||| |||| ||||||||||||||||| |||||||| ||||||||||| | ||||||||| |
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| T |
41687803 |
ggaagatgtgaggaaaagagaggaactatgtgaaagagggaaaagagcacaacaaaattatgaa |
41687866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 14682317 - 14682381
Alignment:
| Q |
12 |
gcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgaga |
76 |
Q |
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| T |
14682317 |
gcgtacagcgtttctgacagaacaatttgatagtgttgaagaaattttagtgagtagatatgaga |
14682381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 211
Target Start/End: Original strand, 14682416 - 14682492
Alignment:
| Q |
135 |
gtttcaagctgaagaagatttgagaaaaagagaggaactatgcgaaagaggaaaaagagcacagaataattatgaaa |
211 |
Q |
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||||||| |||| ||||| ||||| || || |||||| | || || ||||| |||| |||||||||||||||||||| |
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| T |
14682416 |
gtttcaatctgaggaagaattgaggaagagggaggaaatgtgtgagagagggaaaaaagcacagaataattatgaaa |
14682492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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