View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13581_high_2 (Length: 586)
Name: NF13581_high_2
Description: NF13581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13581_high_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Complemental strand, 28700984 - 28700421
Alignment:
| Q |
16 |
atataatacataaataacatcatctcaacagaaatccaaaagtaaataaacataatcccgacactgtcctaatctgagcctatattagactccaagcaaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
28700984 |
atataatacataaataacatcatctcaacagaaatccaaaagtaaataaacataatcccgaa---gtcctaatccgagcctatattagactccaagcaaa |
28700888 |
T |
|
| Q |
116 |
ataaaaatgaggtagtgccatgctaagcctcgagcactcacgtcgccaagaacgtcctcaaatctgcacgtctacgggatttcaagtatgacatatatac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28700887 |
ataaaaatgaggtagtgccatgctaagcctcgagcactcacgtcgccaagaacgtcctcaaatctgcacgtctacgggatttcaaatatgacatatatac |
28700788 |
T |
|
| Q |
216 |
atgctcatcattcctataatactatcatcatgaaaataatattcaatgcaattataattaacacgacaattcgccattcggcatcacgaaagtaaatatt |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
28700787 |
atgctcatcattcctataatactagcatcatgaaaataatattcaattcaattataa----cacgacagttcgccattcggcatcacgaaagtaaatatt |
28700692 |
T |
|
| Q |
316 |
ctcatagagcaatataacatcaataggtcatgacatcattctcatatgaacaatatcaaataaatttacggttttcatacttcgtcatgtataaacatca |
415 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28700691 |
ctcatagagcaatataacatcaagaggtcatgacatcattctcatatgaacaacatcaaataaatttacagttttcatacttcgtcatgtataaacatca |
28700592 |
T |
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| Q |
416 |
aatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaacatatattcatttcaatgacaattaaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28700591 |
aatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaacatatattcatttcaatgacaattaaca |
28700492 |
T |
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| Q |
516 |
actttaagtcgacatgattcacatcttaacataacaaactcttgaacaatatcacattttcaattaggcat |
586 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
28700491 |
actttaagtcgacatgattcacatcttaacataacaaactcttcaataatatcacattttcaattaggcat |
28700421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 28674456 - 28674140
Alignment:
| Q |
20 |
aatacataaataacatcatctcaacagaaatccaaaagtaaataaacataatcccgacactgtcctaatctgagcctatattagactccaagcaaaataa |
119 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28674456 |
aatacataaataacatcatcacaacagaaatccaaaagtaaataaacataatcccgacactgtcctaatctgagtctatattagactccaagcaaaataa |
28674357 |
T |
|
| Q |
120 |
aaatgaggtagtgccatgctaagcctcgagcactcacgtcgccaagaacgtcctcaaatctgcacgtctacgggatttcaagtatgacatatata--cat |
217 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||| ||| |
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| T |
28674356 |
aaatgaggtagcgccatgctaagcctcgagcactcacgtcgccaagaacgtcctcaaacctgcacgtctacaggatttcaagtatggcatatatatacat |
28674257 |
T |
|
| Q |
218 |
gctcatcattcctataatactatcatcatgaaaataatattcaatgcaattataattaacacgacaattcgccattcggcatcacgaaagtaaatattct |
317 |
Q |
| |
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||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||| ||| || ||| |||||| |||||||||||||||||||| | |
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| T |
28674256 |
actcatcattcctagaatactagcatcatgaaaataatcttcaattcaattataaa----acggcagttcaccattcagcatcacgaaagtaaatatttt |
28674161 |
T |
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| Q |
318 |
catagagcaatataacatcaa |
338 |
Q |
| |
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||||||||||||||||||||| |
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| T |
28674160 |
catagagcaatataacatcaa |
28674140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 389 - 519
Target Start/End: Original strand, 43937576 - 43937703
Alignment:
| Q |
389 |
ttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaac |
488 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||| ||||| ||||||| |||||||||||| |||||||||| || ||||||||||||| |
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| T |
43937576 |
ttcatacttcgtcatgtataagcatcaaatcatattccacctatac--ttatatctacatgttataaag-tcaacaagttttcactaacgtttcataagg |
43937672 |
T |
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| Q |
489 |
atatattcatttcaatgacaattaacaactt |
519 |
Q |
| |
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||||||||||||||| ||||||||||||||| |
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| T |
43937673 |
atatattcatttcaacgacaattaacaactt |
43937703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 239
Target Start/End: Complemental strand, 28579667 - 28579624
Alignment:
| Q |
196 |
ttcaagtatgacatatatacatgctcatcattcctataatacta |
239 |
Q |
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||||| ||| |||||||||||||||||||||||||| ||||||| |
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| T |
28579667 |
ttcaaatatcacatatatacatgctcatcattcctagaatacta |
28579624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 342 - 519
Target Start/End: Complemental strand, 13123077 - 13122903
Alignment:
| Q |
342 |
gtcatgacatcattctcatatgaacaatatcaaataaatttacggttttcatacttcgtcatgtataaacatcaaatcatattccacatatacatatata |
441 |
Q |
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||||| ||||||||| ||| | ||| | ||||| |||||| || | |||| ||||||||||||||||||||| ||| | ||||||||||| | ||||| |
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| T |
13123077 |
gtcatcacatcattcccatgttaacgacatcaattaaattcaccttattcacacttcgtcatgtataaacatcgaattacattccacatatgcctatat- |
13122979 |
T |
|
| Q |
442 |
tcttcatgttataaagttcaacaagttcccattaacgtttcataaacatatattcatttcaatgacaattaacaactt |
519 |
Q |
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| | |||||| ||| ||||||||||| || |||| |||||||||||||| ||||| |||||||||| ||||||||| |
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| T |
13122978 |
-ccttatgttagaaa-ttcaacaagttttcactaacatttcataaacatatgttcatatcaatgacaactaacaactt |
13122903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 412 - 524
Target Start/End: Original strand, 1610701 - 1610810
Alignment:
| Q |
412 |
atcaaatcatattccacatatacatatatatcttcatgttataaagttcaacaagttcccattaacgtttcataaacatatattcatttcaatgacaatt |
511 |
Q |
| |
|
||||||| |||||||||||| || ||||| ||||||||||||||||| | |||||| || ||||||||||||| |||||||||||||||| | ||||| |
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| T |
1610701 |
atcaaataatattccacatacacctatat--cttcatgttataaagttta-caagtttccgctaacgtttcataagcatatattcatttcaacggcaatt |
1610797 |
T |
|
| Q |
512 |
aacaactttaagt |
524 |
Q |
| |
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|||||||| |||| |
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| T |
1610798 |
aacaacttcaagt |
1610810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 11622506 - 11622456
Alignment:
| Q |
196 |
ttcaagtatgacatatatacatgctcatcattcctataatactatcatcat |
246 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||| ||||||| |||||| |
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|
| T |
11622506 |
ttcaagtatcacatatatacatgttcatcattcctaaaatactaacatcat |
11622456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 424
Target Start/End: Original strand, 45341566 - 45341599
Alignment:
| Q |
391 |
catacttcgtcatgtataaacatcaaatcatatt |
424 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |
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| T |
45341566 |
catactttgtcatgtataaacatcaaatcatatt |
45341599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 22502084 - 22502035
Alignment:
| Q |
196 |
ttcaagtatgacatatatacatgctcatcattcctataatactatcatca |
245 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||| ||||||| ||||| |
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| T |
22502084 |
ttcaaatatcacatatatacatgctcatcattcctagaatactaccatca |
22502035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 244
Target Start/End: Complemental strand, 15662877 - 15662828
Alignment:
| Q |
195 |
tttcaagtatgacatatatacatgctcatcattcctataatactatcatc |
244 |
Q |
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|||||||||| ||||||||||||||||| ||||||| ||||||| |||| |
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| T |
15662877 |
tttcaagtatcacatatatacatgctcaatattcctagaatactaacatc |
15662828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 19800684 - 19800738
Alignment:
| Q |
192 |
ggatttcaagtatgacatatatacatgctcatcattcctataatactatcatcatg |
247 |
Q |
| |
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||||||||| || |||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
19800684 |
ggatttcaaataccacatatatacatgctcatca-tcctagaatactatcatcatg |
19800738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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