View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13581_low_4 (Length: 480)

Name: NF13581_low_4
Description: NF13581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13581_low_4
NF13581_low_4
[»] chr6 (26 HSPs)
chr6 (21-366)||(28648730-28649075)
chr6 (143-316)||(4868716-4868890)
chr6 (422-472)||(28649131-28649181)
chr6 (143-316)||(12330083-12330256)
chr6 (143-316)||(13353208-13353381)
chr6 (143-316)||(33796333-33796506)
chr6 (163-316)||(9705027-9705181)
chr6 (144-222)||(5648806-5648884)
chr6 (155-315)||(11085589-11085748)
chr6 (264-316)||(12329969-12330021)
chr6 (247-315)||(13740924-13740992)
chr6 (247-315)||(13746424-13746492)
chr6 (155-207)||(15082058-15082110)
chr6 (107-205)||(3680130-3680229)
chr6 (264-315)||(15600944-15600995)
chr6 (143-205)||(6400759-6400821)
chr6 (143-205)||(17147799-17147861)
chr6 (271-316)||(3680253-3680298)
chr6 (264-313)||(20830760-20830809)
chr6 (122-175)||(20864399-20864452)
chr6 (247-332)||(26192421-26192506)
chr6 (264-316)||(4868602-4868654)
chr6 (264-316)||(5164342-5164394)
chr6 (264-316)||(6400645-6400697)
chr6 (264-316)||(9705261-9705313)
chr6 (271-315)||(27772954-27772998)
[»] chr2 (21 HSPs)
chr2 (143-329)||(2029763-2029949)
chr2 (144-316)||(40379349-40379521)
chr2 (143-316)||(14466314-14466487)
chr2 (163-316)||(15124707-15124860)
chr2 (143-316)||(5711578-5711752)
chr2 (163-316)||(17719407-17719560)
chr2 (264-316)||(16533554-16533606)
chr2 (143-206)||(17525238-17525301)
chr2 (143-198)||(44529743-44529797)
chr2 (163-296)||(16419294-16419427)
chr2 (155-207)||(11099518-11099570)
chr2 (143-207)||(31001887-31001951)
chr2 (143-206)||(93258-93321)
chr2 (269-316)||(94050-94097)
chr2 (143-206)||(21383429-21383492)
chr2 (155-206)||(36316201-36316252)
chr2 (135-205)||(2375059-2375129)
chr2 (252-329)||(2029998-2030075)
chr2 (163-204)||(16533431-16533472)
chr2 (264-316)||(16419509-16419561)
chr2 (264-316)||(40379234-40379286)
[»] chr7 (36 HSPs)
chr7 (143-329)||(25620130-25620316)
chr7 (143-316)||(29469612-29469785)
chr7 (143-316)||(36277130-36277303)
chr7 (264-316)||(31485449-31485501)
chr7 (163-316)||(21861301-21861454)
chr7 (125-329)||(18826374-18826578)
chr7 (143-313)||(33996218-33996385)
chr7 (264-316)||(43075335-43075387)
chr7 (264-316)||(43085562-43085614)
chr7 (264-316)||(43089233-43089285)
chr7 (143-202)||(3519864-3519923)
chr7 (143-206)||(48661459-48661522)
chr7 (272-322)||(30727151-30727201)
chr7 (143-316)||(1596601-1596773)
chr7 (264-316)||(23796209-23796261)
chr7 (181-316)||(26239857-26239993)
chr7 (264-315)||(2544472-2544523)
chr7 (163-202)||(20305415-20305454)
chr7 (143-206)||(31485563-31485626)
chr7 (143-206)||(31892269-31892332)
chr7 (283-330)||(32292512-32292559)
chr7 (283-318)||(32292746-32292781)
chr7 (143-206)||(33834308-33834371)
chr7 (264-315)||(34027635-34027686)
chr7 (161-234)||(30727276-30727350)
chr7 (247-321)||(40898723-40898797)
chr7 (271-316)||(15317559-15317604)
chr7 (283-336)||(25507475-25507528)
chr7 (264-316)||(46452639-46452692)
chr7 (264-316)||(3038109-3038161)
chr7 (272-316)||(4454783-4454827)
chr7 (143-315)||(4886337-4886509)
chr7 (264-316)||(20305688-20305740)
chr7 (247-315)||(23839085-23839153)
chr7 (264-316)||(42985148-42985200)
chr7 (264-316)||(48243086-48243138)
[»] chr5 (24 HSPs)
chr5 (143-316)||(41666896-41667070)
chr5 (163-316)||(15480329-15480482)
chr5 (246-323)||(7369724-7369801)
chr5 (264-316)||(170576-170628)
chr5 (143-206)||(95405-95468)
chr5 (145-206)||(18333605-18333666)
chr5 (163-206)||(15590055-15590098)
chr5 (163-206)||(17150392-17150435)
chr5 (163-206)||(24270029-24270072)
chr5 (163-206)||(24346660-24346703)
chr5 (163-205)||(13700749-13700791)
chr5 (273-331)||(16707059-16707117)
chr5 (125-315)||(25258187-25258377)
chr5 (125-315)||(25321977-25322167)
chr5 (143-201)||(33337377-33337435)
chr5 (227-316)||(2063722-2063810)
chr5 (239-316)||(18333465-18333542)
chr5 (264-329)||(31662674-31662739)
chr5 (285-318)||(31974441-31974474)
chr5 (252-316)||(16571473-16571537)
chr5 (265-329)||(17352461-17352525)
chr5 (164-216)||(17423794-17423846)
chr5 (264-316)||(24528547-24528599)
chr5 (264-316)||(41666782-41666834)
[»] chr4 (41 HSPs)
chr4 (143-313)||(22231212-22231382)
chr4 (163-315)||(40717365-40717517)
chr4 (143-315)||(35796881-35797053)
chr4 (143-316)||(50543469-50543644)
chr4 (147-206)||(4905644-4905703)
chr4 (143-316)||(35788666-35788840)
chr4 (107-231)||(25323899-25324025)
chr4 (143-206)||(25324173-25324236)
chr4 (143-206)||(28245665-28245728)
chr4 (105-202)||(5398310-5398408)
chr4 (144-205)||(4645760-4645821)
chr4 (264-325)||(6666225-6666286)
chr4 (143-324)||(6666539-6666720)
chr4 (143-315)||(35819032-35819204)
chr4 (163-206)||(36686065-36686108)
chr4 (264-318)||(35609515-35609569)
chr4 (143-188)||(20726741-20726786)
chr4 (219-316)||(35485234-35485331)
chr4 (180-249)||(49190120-49190189)
chr4 (147-207)||(7572615-7572675)
chr4 (264-316)||(13637396-13637448)
chr4 (264-316)||(35796767-35796819)
chr4 (264-316)||(39902588-39902640)
chr4 (163-206)||(5398634-5398677)
chr4 (163-210)||(6778602-6778649)
chr4 (264-315)||(9685406-9685457)
chr4 (264-315)||(11783817-11783868)
chr4 (272-315)||(16066073-16066116)
chr4 (290-325)||(50870531-50870566)
chr4 (264-315)||(53814954-53815005)
chr4 (143-316)||(22822357-22822531)
chr4 (264-318)||(48052817-48052871)
chr4 (149-206)||(25716010-25716067)
chr4 (264-316)||(400590-400642)
chr4 (166-206)||(11036673-11036713)
chr4 (252-316)||(22231086-22231150)
chr4 (264-316)||(28245551-28245603)
chr4 (264-316)||(28246110-28246162)
chr4 (268-316)||(31254436-31254484)
chr4 (285-329)||(32333956-32334000)
chr4 (144-192)||(42842147-42842195)
[»] chr1 (38 HSPs)
chr1 (143-277)||(27413393-27413527)
chr1 (135-316)||(4098299-4098479)
chr1 (143-313)||(25145624-25145794)
chr1 (143-312)||(26176919-26177088)
chr1 (143-202)||(17208675-17208734)
chr1 (143-205)||(33156852-33156914)
chr1 (143-316)||(39348256-39348429)
chr1 (163-316)||(4112930-4113083)
chr1 (163-315)||(30369843-30369995)
chr1 (143-206)||(2859531-2859594)
chr1 (107-203)||(11524882-11524980)
chr1 (107-203)||(11525097-11525195)
chr1 (143-206)||(25713275-25713338)
chr1 (143-202)||(35772150-35772209)
chr1 (165-316)||(51460368-51460519)
chr1 (239-325)||(31181513-31181599)
chr1 (283-323)||(7465689-7465729)
chr1 (252-316)||(15986346-15986410)
chr1 (264-316)||(25145510-25145562)
chr1 (264-316)||(52650796-52650848)
chr1 (264-316)||(52907391-52907443)
chr1 (290-329)||(11524784-11524823)
chr1 (252-315)||(12244975-12245038)
chr1 (163-206)||(16163050-16163093)
chr1 (264-315)||(27413590-27413641)
chr1 (181-288)||(38733186-38733293)
chr1 (163-206)||(52961464-52961507)
chr1 (282-316)||(34076644-34076678)
chr1 (271-316)||(4098195-4098240)
chr1 (163-244)||(4112699-4112780)
chr1 (272-329)||(12376470-12376527)
chr1 (272-325)||(31004470-31004523)
chr1 (264-329)||(40079146-40079211)
chr1 (143-202)||(369752-369812)
chr1 (161-293)||(5109280-5109412)
chr1 (290-334)||(21765113-21765156)
chr1 (163-207)||(26173380-26173424)
chr1 (163-207)||(31496295-31496339)
[»] scaffold0692 (2 HSPs)
scaffold0692 (143-316)||(5658-5831)
scaffold0692 (283-316)||(5588-5621)
[»] chr3 (31 HSPs)
chr3 (163-316)||(4155331-4155484)
chr3 (163-315)||(45828027-45828179)
chr3 (143-316)||(35038333-35038505)
chr3 (143-206)||(22775538-22775601)
chr3 (133-203)||(21888525-21888595)
chr3 (218-316)||(22729107-22729205)
chr3 (183-316)||(54567899-54568032)
chr3 (163-315)||(20327773-20327925)
chr3 (264-315)||(9273203-9273254)
chr3 (143-205)||(46139380-46139442)
chr3 (180-237)||(34678617-34678674)
chr3 (182-315)||(35018483-35018616)
chr3 (264-316)||(50930709-50930761)
chr3 (143-206)||(13574824-13574887)
chr3 (264-315)||(23691217-23691268)
chr3 (264-315)||(23708017-23708068)
chr3 (264-315)||(23726473-23726524)
chr3 (264-315)||(23744929-23744980)
chr3 (264-315)||(24063454-24063505)
chr3 (143-206)||(31150961-31151024)
chr3 (143-206)||(34992723-34992786)
chr3 (163-205)||(20303223-20303265)
chr3 (163-205)||(21809064-21809106)
chr3 (253-315)||(23708238-23708300)
chr3 (253-315)||(23726694-23726756)
chr3 (253-315)||(23745150-23745212)
chr3 (253-315)||(24063675-24063737)
chr3 (264-313)||(1800225-1800274)
chr3 (227-315)||(1723064-1723152)
chr3 (264-328)||(18757837-18757901)
chr3 (264-316)||(45138827-45138879)
[»] scaffold0519 (1 HSPs)
scaffold0519 (143-316)||(1923-2096)
[»] chr8 (31 HSPs)
chr8 (143-316)||(11232333-11232506)
chr8 (163-316)||(20301268-20301421)
chr8 (163-316)||(21087900-21088053)
chr8 (143-316)||(39052833-39053006)
chr8 (143-206)||(8466627-8466690)
chr8 (163-206)||(35682940-35682983)
chr8 (143-206)||(39960074-39960137)
chr8 (143-207)||(3157148-3157212)
chr8 (143-242)||(3157463-3157562)
chr8 (163-206)||(18004253-18004296)
chr8 (143-206)||(39052676-39052739)
chr8 (218-316)||(5590347-5590445)
chr8 (163-329)||(41790653-41790818)
chr8 (163-316)||(5932108-5932261)
chr8 (271-316)||(7669648-7669693)
chr8 (239-323)||(38475747-38475831)
chr8 (264-315)||(18939322-18939373)
chr8 (151-206)||(19472396-19472451)
chr8 (151-206)||(19543321-19543376)
chr8 (151-206)||(19589320-19589375)
chr8 (163-206)||(31197731-31197774)
chr8 (170-316)||(24532352-24532498)
chr8 (107-192)||(38476174-38476260)
chr8 (283-325)||(38476275-38476317)
chr8 (271-329)||(40014652-40014710)
chr8 (283-325)||(44931226-44931268)
chr8 (165-206)||(422379-422420)
chr8 (247-315)||(4828301-4828369)
chr8 (158-206)||(26208167-26208215)
chr8 (264-316)||(38447452-38447504)
chr8 (264-316)||(42049712-42049764)
[»] scaffold0129 (1 HSPs)
scaffold0129 (143-316)||(14310-14483)
[»] scaffold0729 (1 HSPs)
scaffold0729 (163-210)||(2607-2654)
[»] scaffold0003 (2 HSPs)
scaffold0003 (151-206)||(87721-87776)
scaffold0003 (161-205)||(102299-102343)
[»] scaffold0041 (1 HSPs)
scaffold0041 (247-321)||(67487-67561)
[»] scaffold0400 (1 HSPs)
scaffold0400 (165-206)||(3962-4003)
[»] scaffold0365 (1 HSPs)
scaffold0365 (165-206)||(4606-4647)
[»] scaffold0083 (1 HSPs)
scaffold0083 (264-316)||(51243-51295)


Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 28648730 - 28649075
Alignment:
Q  21 tcaatgaatctttgataatacaaaagggaatcatgccatatatgctatgtattagaatttgtggttggtcctaatacaatcccacaatgtgggactcttt 120  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  28648730 tcaatgaatctttgataatacaaaagggaatcatgccagatatgctatgtattagaatttgtggttggtcctaatacaatcccacaatgcgggactcttt 28648829  T
Q  121 aacacccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28648830 aacacccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattg 28648929  T
Q  221 gatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttat 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28648930 gatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttat 28649029  T
Q  321 tcaggtcatatcactttttgtgtgggacacttcaatgataatagtc 366  Q
    |||||||||||||||||||||||||||||||| |||||||||||||    
T  28649030 tcaggtcatatcactttttgtgtgggacactttaatgataatagtc 28649075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 4868716 - 4868890
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga-tagactctgatatcaactt 241  Q
    |||||||||| | |||| | ||||||||||||| |||||||| ||||||||| |||||||||||  |||| ||| |||||  || |||||||| || |||    
T  4868716 attgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccagcggatcttggaggaggctctgataccatctt 4868815  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||  | || ||||| || || |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  4868816 agaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4868890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 422 - 472
Target Start/End: Original strand, 28649131 - 28649181
Alignment:
Q  422 cagagctgaagaccttccattgaatgaaattgatgatctttatcttcttga 472  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28649131 cagagctgaagaccttccattgaatgaaattgatgatctttatcttcttga 28649181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 12330083 - 12330256
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| ||||||| |||||||||| |||||||||||  ||   ||| ||||| || |||||||| ||  |||    
T  12330083 attgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaggtggcccaatggatcttggagaggctctgataccatatta 12330182  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || ||||||||||||||||   |||||| ||||||  |||||||||||||||||||    
T  12330183 gaaatcgtggttgggcctaacacaacctcacaaaaccggcttgtgaggtgagggttgcccccacttataaacac 12330256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 13353381 - 13353208
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||| |||||||  ||   ||| ||||| || |||||||| || ||||    
T  13353381 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatctta 13353282  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| |||||||||||||||||||    
T  13353281 gaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacac 13353208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 33796506 - 33796333
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||| |||||||  ||   ||| ||||| || |||||||| || ||||    
T  33796506 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatctta 33796407  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| |||||||||||||||||||    
T  33796406 gaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacac 33796333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 9705181 - 9705027
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggat-agactctgatatcaacttagactttgtcgttggaccaa 261  Q
    ||||||||||||| ||||||||  |||||||| |||||||||||  || || || |||||  || |||||||| || ||||||  | || ||||| || |    
T  9705181 ataaatggtgggtggcccgataatggaaacctgatagcaggtggcccaacaaatcttggaggaggctctgataccatcttagaaatggtggttgggccta 9705082  T
Q  262 aaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    | |||||| ||||||||| | |||||| |||| || |||||||||||||||||||    
T  9705081 acacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaacac 9705027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 144 - 222
Target Start/End: Original strand, 5648806 - 5648884
Alignment:
Q  144 ttgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga 222  Q
    ||||| ||||| |||||| |||||| ||| || |||||||||||||||||| |||||| |||| ||| ||||| |||||    
T  5648806 ttgggtttgattcgtgaacataaatagtgagtggcccgatagcggaaacctgatagcatgtggatcatcagatcttgga 5648884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 315
Target Start/End: Complemental strand, 11085748 - 11085589
Alignment:
Q  155 gcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgtt 254  Q
    ||||||| ||||||||||| | |  ||||||||||||||| |||||||||||  || |  || ||||| || |||| | | || ||||||  | ||  ||    
T  11085748 gcgtgaacataaatggtggtt-gttcgatagcggaaacctgatagcaggtggcccaacgtatcttggagaggctctaaaaccatcttagaaatcgtgatt 11085650  T
Q  255 ggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||| || |||||| |||||||||   |||||||||||| | ||||||||||||||||||    
T  11085649 ggacctaacacaaccgcacaaaaccggcttgtgaagtgagaattgcccccacttataaaca 11085589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 12329969 - 12330021
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||||||||| ||  |||||| ||||||| |||||||||||||||||||    
T  12329969 acaacctcacaaaatcagcttgtgaggtgaggattgcccccacttataaacac 12330021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 13740992 - 13740924
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||| ||||| || || |||||| ||||||||| | |||||||||||||| ||| ||||||||||||||    
T  13740992 ttgtggttgggcctaacacaaccccacaaaaccgacttgtgaagtgaggattgctcccacttataaaca 13740924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 13746492 - 13746424
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||| ||||| || || |||||| ||||||||| | |||||||||||||| ||| ||||||||||||||    
T  13746492 ttgtggttgggcctaacacaaccccacaaaaccgacttgtgaagtgaggattgctcccacttataaaca 13746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 15082058 - 15082110
Alignment:
Q  155 gcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    ||||||| ||||||||||||| ||||||||  |||||||| ||||||||||||    
T  15082058 gcgtgaacataaatggtgggtggcccgataatggaaacctgatagcaggtggt 15082110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 205
Target Start/End: Complemental strand, 3680229 - 3680130
Alignment:
Q  107 atgtgggactcttta-acacccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||||||||| | || ||||||  | ||||||  |||||||||| |  ||| | ||||||||||| |  ||||||||||||||||||||||||||||    
T  3680229 atgtgggactcttaacacccccctcacgaccaacactattgggcttggtttgtggacataaatggtggatgacccgatagcggaaacctaatagcaggtg 3680130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 15600995 - 15600944
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| ||||||||  | |||||||||||||| ||||||||||||||||||    
T  15600995 acaaccccacaaaactgacttgtgaagtgaggattgcccccacttataaaca 15600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 6400759 - 6400821
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    |||||||||| | |||| | ||||||||||||| | |||||||| ||||||| ||||||||||    
T  6400759 attgggcttggttcgtggacataaatggtgggtggtccgatagcagaaacctgatagcaggtg 6400821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 17147799 - 17147861
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    |||||||||| | |||| | |||||||||||||  || |||||||||||||| ||||||||||    
T  17147799 attgggcttggttcgtggacataaatggtgggtgacctgatagcggaaacctgatagcaggtg 17147861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 3680298 - 3680253
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||| |||||| |||| || |||||||||||||||||||    
T  3680298 cacaaaaccaacttgtgaggtgatgattgcccccacttataaacac 3680253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 20830809 - 20830760
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaa 313  Q
    |||||||||||||| || ||||||| |||| || ||||||||||||||||    
T  20830809 acaacctcacaaaatcagtttgtgaggtgatgattgcccccacttataaa 20830760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 175
Target Start/End: Complemental strand, 20864452 - 20864399
Alignment:
Q  122 acacccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggt 175  Q
    ||||| ||| |||||||||  |||| ||||| ||||||||||||||||||||||    
T  20864452 acaccactcatgtccaacactattgagcttggtgcgtgaatataaatggtgggt 20864399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 26192421 - 26192506
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcatatc 332  Q
    |||| |||||||| || |||||||||||||| ||||||||||  | |||| ||| || |||||||||||  | |||| ||||||||    
T  26192421 ttgtggttggacccaacacaacctcacaaaatcaatttgtgatataaggattgcaccaacttataaacatatgttcatgtcatatc 26192506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 4868602 - 4868654
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  4868602 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4868654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 5164394 - 5164342
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||| ||||||||| ||||| | || ||||| ||||||||||    
T  5164394 acaacctcacaaaactaatttgtgaggtgagaattgtccccatttataaacac 5164342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 6400645 - 6400697
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||| | |||||| ||||||| |||| ||||||||||||||    
T  6400645 acaaccccacaaaaccgacttgtgatgtgaggattgcctccacttataaacac 6400697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 9705313 - 9705261
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  9705313 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 9705261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 27772998 - 27772954
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||  |||||| ||||||| ||||||||||||||||||    
T  27772998 cacaaaaccagcttgtgaggtgaggattgcccccacttataaaca 27772954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 8e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 143 - 329
Target Start/End: Complemental strand, 2029949 - 2029763
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| | ||||||||||||||||||||||||||||  ||   ||| ||||| || |||||||| || ||||    
T  2029949 attgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctaatagcaggtggcccaatggatcttggagaggctctgataccatctta 2029850  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||  | || ||||| || ||||||||| |||||||||   |||||| ||||||| |||| |||||||||||||| |  |||||||||    
T  2029849 gaaatcgtggttgggcctaaaacaaccccacaaaaccggcttgtgaggtgaggattgcctccacttataaacacattgtcaggtcat 2029763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 144 - 316
Target Start/End: Original strand, 40379349 - 40379521
Alignment:
Q  144 ttgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttag 243  Q
    ||||||||| | |||| ||||||||||||||| ||||||||| |||||||| |||||||||||   |   ||| ||||| || |||||||| || |||||    
T  40379349 ttgggcttggttcgtggatataaatggtgggtggcccgatagaggaaacctgatagcaggtggcctaatggatcttggaaaggctctgataccatcttag 40379448  T
Q  244 actttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |  | || ||||| || || |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  40379449 aaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 40379521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 14466314 - 14466487
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||| || ||||  ||   ||| ||||| || |||||||| || ||||    
T  14466314 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacaagtggcccaatggatcttggagaggctctgataccatctta 14466413  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| ||| |||||||||||||||    
T  14466414 gaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgctcccacttataaacac 14466487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 15124707 - 15124860
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||| |  ||||||| || |||||| |||||||||||| ||   ||| ||||| ||||||||||| || ||||||  | || |||||  | ||    
T  15124707 ataaatggtggatgacccgataacgaaaacctgatagcaggtggtccaatggatcttggagagactctgataccatcttagaaatcgtggttgggtctaa 15124806  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||| ||||||||| | ||||||||||| || ||||| |||||||||||||    
T  15124807 cacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaacac 15124860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 5711578 - 5711752
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga-tagactctgatatcaactt 241  Q
    |||||||||| | |||| | ||||||||||||| |||||||| ||||||||| |||||||||||| || | ||| |||||  || ||||||||  | |||    
T  5711578 attgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggtccaacggatcttggaggaggctctgatactatctt 5711677  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||  | || ||||| || || |||||| |||||||||   || | | |||| || |||||||||||||||||||    
T  5711678 agaaatggtggttgggcctaacacaaccccacaaaaccggcttttaaggtgatgattgcccccacttataaacac 5711752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 17719560 - 17719407
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||| | ||| ||||| |||||||| |||||||||||   |   ||| ||||| ||||| ||||| || ||||||  |||| ||||| || ||    
T  17719560 ataaatggtggatggccggataggggaaacctgatagcaggtggccaaatggatcttggagagactttgataccatcttagaaattgtggttgggccgaa 17719461  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     ||||||  ||||||||   |||||| ||||||| |||||||||||||||||||    
T  17719460 cacaacccgacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 17719407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 16533606 - 16533554
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||   |||||||||||||| |||||||||||||||||||    
T  16533606 acaacctcacaaaaccggcttgtgaagtgaggattgcccccacttataaacac 16533554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 17525238 - 17525301
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| ||||||||||||| |||| |||||||||||    
T  17525238 attgggcttggttcgtggacataaatggtgggtggcccgatagcggatacctgatagcaggtgg 17525301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 44529743 - 44529797
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaata 198  Q
    |||||||||| |||||||||||||||||||||| || ||||||| |||||||||||    
T  44529743 attgggcttggtgcgtgaatataaatggtgggtggctcgatagc-gaaacctaata 44529797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 296
Target Start/End: Complemental strand, 16419427 - 16419294
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| || ||||||||||||||| |||||||||||  ||   ||| ||||| || |||||||| || ||||||  | || ||||| || ||    
T  16419427 ataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttggagaggctctgataccatcttagaaatcgtggttgggcctaa 16419328  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgagga 296  Q
     |||||| |||||||||   |||||| |||||||    
T  16419327 tacaaccccacaaaaccggcttgtgaggtgagga 16419294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 155 - 207
Target Start/End: Original strand, 11099518 - 11099570
Alignment:
Q  155 gcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    ||||||||||||||||||||| || |||||||||||| || ||||||| ||||    
T  11099518 gcgtgaatataaatggtgggtggctcgatagcggaaatctgatagcagatggt 11099570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 31001887 - 31001951
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    |||||||||| | |||| ||||||||||| ||| ||  |||||||||||||| ||||||||||||    
T  31001887 attgggcttggttcgtggatataaatggtaggtggcatgatagcggaaacctgatagcaggtggt 31001951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 93258 - 93321
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||||| |||| | |||| |||||||| |||||||| |||||| || |||||||||||    
T  93258 attgggcttgattcgtggacataattggtgggtggcccgataacggaaagctgatagcaggtgg 93321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 316
Target Start/End: Original strand, 94050 - 94097
Alignment:
Q  269 ctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||| | |||||| ||||||| |||||||||||||||||||    
T  94050 ctcacaaaaccgacttgtgaggtgaggattgcccccacttataaacac 94097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 21383429 - 21383492
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||| ||||| |||||| ||||||||  ||||| |||| ||||||||||||| |||||||||||    
T  21383429 attgtgcttggtgcgtggatataaataatgggtggcccaatagcggaaacctgatagcaggtgg 21383492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 36316201 - 36316252
Alignment:
Q  155 gcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||| ||||||||||||| |||||||| ||||||||| ||| |||||||    
T  36316201 gcgtgaacataaatggtgggtggcccgataacggaaacctgataacaggtgg 36316252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 2375059 - 2375129
Alignment:
Q  135 ccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||| ||| |||||||| | |||||||||||||||||| | |||||| || ||| || ||||||||||    
T  2375059 ccaacattatttggcttgattcatgaatataaatggtgggtggtccgataacgaaaatctgatagcaggtg 2375129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 2030075 - 2029998
Alignment:
Q  252 gttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||||| || ||||||||| |||||||||   |||||| ||||||| |||| |||||||||||||| |  |||||||||    
T  2030075 gttgggcctaaaacaaccccacaaaaccggcttgtgaggtgaggattgcctccacttataaacacattgtcaggtcat 2029998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 16533472 - 16533431
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggt 204  Q
    ||||||||||||| ||||||||||| |||||| |||||||||    
T  16533472 ataaatggtgggtggcccgatagcgaaaacctgatagcaggt 16533431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 16419561 - 16419509
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  16419561 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 16419509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 40379234 - 40379286
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  40379234 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 40379286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 329
Target Start/End: Complemental strand, 25620316 - 25620130
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||| ||||||||||||| |||||||||||  ||   ||| ||||| || |||||||| || ||||    
T  25620316 attgggcttggttcgtggacataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatggatcttggagaggctctgataccatctta 25620217  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||  | || ||||| || || |||||| |||||||||   |||||| ||||||| ||||||||||||||||||| |  |||||||||    
T  25620216 gaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggtcat 25620130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 29469785 - 29469612
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||||| |||| | ||||||||||||| |||||||||||||| ||| ||| |||||||  ||   ||| ||||| || |||||||| ||  |||    
T  29469785 attgggcttgattcgtggacataaatggtgggtggcccgatagcggaagcctgataacaggtggcccaatggatcttggagaggctctgataccatatta 29469686  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| |||||||||||||||||||    
T  29469685 gaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacac 29469612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 36277130 - 36277303
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| | |||||||||||||||| |||| ||||||  ||   ||| ||||| || |||||||| || ||||    
T  36277130 attgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagtaggtggcccaatggatcttggagaggctctgataacatctta 36277229  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || |||||  | || |||||| ||||||| | | |||||| ||||||| |||||||||||||||||||    
T  36277230 gaaatcgtggttgggactaacacaaccccacaaaatcgacttgtgaggtgaggattgcccccacttataaacac 36277303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 31485449 - 31485501
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||    
T  31485449 acaacctcacaaaaccagtttgtgatgtgaggattgcccccacttataaacac 31485501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 21861454 - 21861301
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| |||||||||||||||||| ||| |||||||  ||   ||| ||||| || |||||||| || ||||||  | || ||||| || ||    
T  21861454 ataaatggtgggtggcccgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatcttagaaatggtggttgggcctaa 21861355  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||| | |||||||||   |||| | ||||||| ||||| |||||||||||||    
T  21861354 cacaatcccacaaaaccggcttgtaaggtgaggattgccctcacttataaacac 21861301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 329
Target Start/End: Original strand, 18826374 - 18826578
Alignment:
Q  125 cccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggata 224  Q
    |||||| || ||||||  |||||||||| | ||||   ||||||||||||| || ||||||||||||  | ||||||| ||| ||||  ||| ||| | |    
T  18826374 cccctcatgaccaacacaattgggcttggttcgtggtcataaatggtgggtggctcgatagcggaaatttgatagcagatggctcagtggatcttgaaga 18826473  T
Q  225 gactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcag 324  Q
    | ||||||||||| ||||||  || | |||| ||| || |||||| ||||||| ||  ||||||  |||| | | ||||||||||||||||| |  ||||    
T  18826474 ggctctgatatcatcttagaaattatggttgaacctaacacaaccccacaaaatcagcttgtgagttgagaattacccccacttataaacacattgtcag 18826573  T
Q  325 gtcat 329  Q
    |||||    
T  18826574 gtcat 18826578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 313
Target Start/End: Original strand, 33996218 - 33996385
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| ||||||| |||||||||| |||||||||||  ||   ||   |||| || |||||||| || ||||    
T  33996218 attgggcttggttcgtggacataaatggtgggtggcccgattgcggaaacctgatagcaggtggcccaatgga---tggagaggctctgataccatctta 33996314  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaa 313  Q
    ||  | || ||||| || || |||||  ||||||||| | |||||| |||| || ||||||||||||||||    
T  33996315 gaaatcgtggttgggcctaacacaactccacaaaaccgacttgtgaggtgaagattgcccccacttataaa 33996385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 43075335 - 43075387
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  43075335 acaaccccacaaaaccaacttgtgaggtgaggattgcccccacttataaacac 43075387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 43085562 - 43085614
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  43085562 acaaccccacaaaaccaacttgtgaggtgaggattgcccccacttataaacac 43085614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 43089233 - 43089285
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  43089233 acaaccccacaaaaccaacttgtgaggtgaggattgcccccacttataaacac 43089285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 3519864 - 3519923
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcag 202  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| |||||||    
T  3519864 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcag 3519923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 48661459 - 48661522
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| |||||| ||||||||||| |||||||||||    
T  48661459 attgggcttggttcgtggacataaatggtgggtggcccgaaagcggaaacctgatagcaggtgg 48661522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 30727151 - 30727201
Alignment:
Q  272 acaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattc 322  Q
    |||||||||  |||||| ||||||| |||||||||||||||||||||||||    
T  30727151 acaaaaccagcttgtgaggtgaggattgcccccacttataaacacttattc 30727201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 1596773 - 1596601
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||| || ||||  ||   ||| ||||| || |||||||| || ||||    
T  1596773 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgataacatgtggcccaatggatcttggagaggctctgataccatctta 1596674  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  |||| ||| | || || |||||| ||| |||||   |||| | ||||||| ||||||||||||| |||||    
T  1596673 gaaattgtggttaggcctaacacaaccccac-aaaccggcttgtaaggtgaggattgcccccacttattaacac 1596601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 23796209 - 23796261
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||| |||||||||| |||| || |||||||||||||||||||    
T  23796209 acaaccccacaaaatcaatttgtgaggtgatgattgcccccacttataaacac 23796261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 316
Target Start/End: Original strand, 26239857 - 26239993
Alignment:
Q  181 gatagcggaaacctaatagcaggtggttcagcagatattggat-agactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaacc 279  Q
    |||| ||||||||| |||||||||||  || | ||| |||||  || |||||||| || ||||||  |||| |||||  | || |||||| ||||| |||    
T  26239857 gataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatcttagaaattgtggttgggtctaacacaaccccacaatacc 26239956  T
Q  280 aatttgtgaagtgaggactgcccccacttataaacac 316  Q
     | |||||| ||||||| |||||||||||||||||||    
T  26239957 gacttgtgaggtgaggattgcccccacttataaacac 26239993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 2544472 - 2544523
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  2544472 acaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 2544523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 20305454 - 20305415
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcag 202  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  20305454 ataaatggtgggtggcccgatagcggaaacctgatagcag 20305415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 31485563 - 31485626
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||| ||||| |||| ||||||||||||||| ||||||||| | |||||| |||| ||||||    
T  31485563 attgggtttgattcgtggatataaatggtgggtggcccgatagtgaaaacctgatagtaggtgg 31485626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 31892332 - 31892269
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| ||| |||| ||||||||| |||||||||||    
T  31892332 attgggcttggttcgtggacataaatggtgggtggcctgataacggaaacctgatagcaggtgg 31892269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 32292559 - 32292512
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacacttattcaggtcata 330  Q
    |||||| |||||||| |||||||||||||||||||| |||||| ||||    
T  32292559 ttgtgaggtgaggaccgcccccacttataaacacttgttcaggccata 32292512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 32292781 - 32292746
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacactt 318  Q
    |||||| |||||||||||||||||||||||||||||    
T  32292781 ttgtgaggtgaggactgcccccacttataaacactt 32292746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 33834371 - 33834308
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| ||||||||| | |||||| |||||||||||    
T  33834371 attgggcttggttcgtggacataaatggtgggtggcccgatagggaaaacctgatagcaggtgg 33834308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 34027686 - 34027635
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| |||||||||   |||||||||||||| ||||||||||||||||||    
T  34027686 acaaccccacaaaaccggcttgtgaagtgaggattgcccccacttataaaca 34027635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 30727276 - 30727350
Alignment:
Q  161 atataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga-tagactctgata 234  Q
    ||||||||||||||| |||| ||||||||||||| |||| ||||||  || || || ||||| ||||||||||||    
T  30727276 atataaatggtgggtggcccaatagcggaaacctgatagaaggtggcccaacaaatcttggattagactctgata 30727350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 321
Target Start/End: Original strand, 40898723 - 40898797
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttatt 321  Q
    |||| ||||||||||| |||||  ||||||| |  ||||| | ||||||| ||||||||||||||||||| ||||    
T  40898723 ttgtggttggaccaaacacaactccacaaaatcggtttgtaaggtgaggattgcccccacttataaacacatatt 40898797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 15317604 - 15317559
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||| | ||||||| ||||||| |||||||||||||||||||    
T  15317604 cacaaaactagtttgtgaggtgaggattgcccccacttataaacac 15317559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 25507475 - 25507528
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacacttattcaggtcatatcactt 336  Q
    |||||| | ||||||||||||||||| ||||||||| ||||||  |||||||||    
T  25507475 ttgtgaggcgaggactgcccccacttgtaaacacttgttcaggctatatcactt 25507528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 46452692 - 46452639
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactg-cccccacttataaacac 316  Q
    |||||| ||||||||||| |||||| ||||||| || |||||||||||||||||    
T  46452692 acaaccccacaaaaccaacttgtgaggtgaggattgccccccacttataaacac 46452639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 3038109 - 3038161
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  3038109 acaaccccacaaaaccggcttgtgacgtgaggattgcccccacttataaacac 3038161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 316
Target Start/End: Complemental strand, 4454827 - 4454783
Alignment:
Q  272 acaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||  ||||||| ||||||| |||||||||||||||||||    
T  4454827 acaaaaccggtttgtgaggtgaggattgcccccacttataaacac 4454783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 315
Target Start/End: Complemental strand, 4886509 - 4886337
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| || ||||||  ||||| | |||||||||||  ||   ||| ||||| |||| |||||| || ||||    
T  4886509 attgggcttggttcgtggacataaatggtgggtggctcgatagtagaaacttgatagcaggtggcccaatggatcttggagagaccctgataccatctta 4886410  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||  | || ||||| || || |||||||| | |||||   |||||| ||||||| |||||||| | |||||||    
T  4886409 gaaatcgtggttgggcctaacacaacctcgccaaaccggcttgtgaggtgaggattgcccccattaataaaca 4886337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 20305688 - 20305740
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||  | ||||||| ||||||| |||||||||||||||||||    
T  20305688 acaaccccacaaaataagtttgtgaggtgaggattgcccccacttataaacac 20305740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 315
Target Start/End: Original strand, 23839085 - 23839153
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| ||| || || ||||||||||||||||   |||||| ||||||| | ||||||||||||||||    
T  23839085 ttgtcgatgggcctaacacaacctcacaaaaccggcttgtgaggtgaggatttcccccacttataaaca 23839153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 42985148 - 42985200
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||||||||| | | |||||| ||||||| |||| ||||||||||||||    
T  42985148 acaacctcacaaaatcgacttgtgaggtgaggattgcctccacttataaacac 42985200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 48243086 - 48243138
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  48243086 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 48243138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 41666896 - 41667070
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga-tagactctgatatcaactt 241  Q
    |||||||||| | |||| | ||||||||||||| |||||||| ||||||||| |||||||||||  || | ||| |||||  || |||||||| || |||    
T  41666896 attgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatctt 41666995  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||  | || ||||| || || |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  41666996 agaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 41667070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 15480482 - 15480329
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||  ||   ||| ||| | || |||||||| || ||||||  | || ||||| || ||    
T  15480482 ataaatggtgggtggcccaatagcggaaacctgatagcaggtggcccaatggatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaa 15480383  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     | |||| ||||||||||  |||||| ||||||| |||||||||||||||||||    
T  15480382 cagaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 15480329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 323
Target Start/End: Complemental strand, 7369801 - 7369724
Alignment:
Q  246 tttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattca 323  Q
    ||||| ||||| || || |||||| |||||||||   |||||| ||||||||||||||||||||||||||||| ||||    
T  7369801 tttgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggactgcccccacttataaacacttgttca 7369724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 170576 - 170628
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||   |||||| |||||||||||||||||||||||||||    
T  170576 acaacctcacaaaaccggcttgtgaggtgaggactgcccccacttataaacac 170628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 95405 - 95468
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| ||||||| |||||||||| |||||||||||    
T  95405 attgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagcaggtgg 95468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 206
Target Start/End: Original strand, 18333605 - 18333666
Alignment:
Q  145 tgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||| | |||| | ||||||||||||| ||||||||||| |||||| |||||||||||    
T  18333605 tgggcttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatagcaggtgg 18333666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 15590098 - 15590055
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| ||||||||||||||||||| | |||||||||||    
T  15590098 ataaatggtgagtagcccgatagcggaaacttgatagcaggtgg 15590055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 17150392 - 17150435
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| |||||||||||||||||| |||| ||||||    
T  17150392 ataaatggtgggtggcccgatagcggaaacctgatagtaggtgg 17150435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 24270029 - 24270072
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||    
T  24270029 ataaatggtgggtggcccgataacggaaacctgatagcaggtgg 24270072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 24346660 - 24346703
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||    
T  24346660 ataaatggtgggtggcccgataacggaaacctgatagcaggtgg 24346703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 13700749 - 13700791
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||    
T  13700749 ataaatggtgggtggcctgatagcggaaacctgatagcaggtg 13700791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 16707059 - 16707117
Alignment:
Q  273 caaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcatat 331  Q
    ||||||||  |||||| || |||| ||||||||||||||||||| | ||||||||||||    
T  16707059 caaaaccagcttgtgaggttaggattgcccccacttataaacacatgttcaggtcatat 16707117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 315
Target Start/End: Original strand, 25258187 - 25258377
Alignment:
Q  125 cccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggata 224  Q
    |||||| || ||| ||| ||| |||||| | |||| | |||||| |||||| | |||||||||||||||| |||||||||||  ||   ||| ||||| |    
T  25258187 cccctcatgaccagcattatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttggaga 25258286  T
Q  225 gactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
      |||||||| || ||||||  | || ||||     || |||||| ||||||||| | |||||| ||||||| |||||||||| |||||||    
T  25258287 agctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccactgataaaca 25258377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 315
Target Start/End: Original strand, 25321977 - 25322167
Alignment:
Q  125 cccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggata 224  Q
    |||||| || ||| ||| ||| |||||| | |||| | |||||| |||||| | |||||||||||||||| |||||||||||  ||   ||| ||||| |    
T  25321977 cccctcatgaccagcattatttggcttggttcgtggacataaattgtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttggaga 25322076  T
Q  225 gactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
      |||||||| || ||||||  | || ||||     || |||||| ||||||||| | |||||| ||||||| |||||||||| |||||||    
T  25322077 agctctgataccatcttagaaatcgtggttgagtttaacacaaccccacaaaaccgacttgtgaggtgaggattgcccccactgataaaca 25322167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 33337377 - 33337435
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagca 201  Q
    |||||||||| | |||| | ||||||||||||| ||||||| |||||||||| ||||||    
T  33337377 attgggcttggttcgtggacataaatggtgggtggcccgatggcggaaacctgatagca 33337435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 2063722 - 2063810
Alignment:
Q  227 ctctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||| || ||||||  | || ||||| || || |||||| ||||||||| | |||||| ||||||| |||||||||||||||||||    
T  2063722 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtga-gtgaggattgcccccacttataaacac 2063810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 316
Target Start/End: Original strand, 18333465 - 18333542
Alignment:
Q  239 cttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||| ||||| || || |||||| |||||||||   |||||| ||||||| | |||||||||||||||||    
T  18333465 cttagaatttgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattacccccacttataaacac 18333542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 31662674 - 31662739
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||||||||||||||||  ||||||| | |||||  || |||| ||||||||||||||||| |||||    
T  31662674 acaacctcacaaaaccggtttgtgaggcgaggatagcacccatttataaacacttattcacgtcat 31662739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 31974474 - 31974441
Alignment:
Q  285 gtgaagtgaggactgcccccacttataaacactt 318  Q
    |||| |||||||||||||||||||||||||||||    
T  31974474 gtgaggtgaggactgcccccacttataaacactt 31974441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 16571473 - 16571537
Alignment:
Q  252 gttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||| || | |||| |||||||||||||| ||| ||||||| | |||||||||| ||||||    
T  16571473 gttggacctaacataaccccacaaaaccaatttatgaggtgaggatttcccccacttaaaaacac 16571537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 265 - 329
Target Start/End: Original strand, 17352461 - 17352525
Alignment:
Q  265 caacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    |||||||||||||||   |||||| |||| || ||||||||||||||||||| |  |||||||||    
T  17352461 caacctcacaaaaccggcttgtgaggtgatgattgcccccacttataaacacattgtcaggtcat 17352525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 17423794 - 17423846
Alignment:
Q  164 taaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagat 216  Q
    |||||||||||| | |||||||||||||||  ||||||||||| ||| |||||    
T  17423794 taaatggtgggttgtccgatagcggaaaccggatagcaggtggctcaacagat 17423846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 24528599 - 24528547
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  24528599 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 24528547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 41666782 - 41666834
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  41666782 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 41666834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 313
Target Start/End: Original strand, 22231212 - 22231382
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||| ||| |||||||||||||||||| |||||||||||  ||   ||| ||||| || |||||||| || ||||    
T  22231212 attgggcttggttcgtggacataaatggtaggtggcccgatagcggaaacctgatagcaggtggcccaatggattttggagaggctctgataccatctta 22231311  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaa 313  Q
    ||  | || ||||| || || |||||| |||||||||   |||||| ||||||| ||||||||||||||||    
T  22231312 gaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaa 22231382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 40717365 - 40717517
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| | |||||||||||||||| || ||||||||  ||   ||||||||| || |||||||| || ||||||  | || ||||| || ||    
T  40717365 ataaatggtgggtggtccgatagcggaaacctgatggcaggtggcccaatggatattggagaggctctgataccatcttagaaatcgtggttgggcctaa 40717464  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
     |||||| ||||||||| | || ||| ||||||| ||||||||||||||||||    
T  40717465 cacaaccccacaaaaccgacttttgaggtgaggattgcccccacttataaaca 40717517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 35796881 - 35797053
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| ||||||||| || ||   ||| | | | || |||||||| || ||||    
T  35796881 attgggcttggttcgtggagataaatggtgggtggcccgatagcggaaacctgatagcaggtagtccaatggatctcgaagaggctctgataccatctta 35796980  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||  | || ||||| |  || |||||| ||||||||   ||||||| ||||||| ||||||||||||||||||    
T  35796981 gaaatggtagttgggcttaacacaaccccacaaaactggtttgtgaggtgaggattgcccccacttataaaca 35797053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 50543469 - 50543644
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagca--gatattggatagactctgatatcaact 240  Q
    |||||||||| | |||| | ||||||||||||| |||||||| ||||||||| ||||||||||||  |  |  ||| ||||| || ||||||||||| ||    
T  50543469 attgggcttggttcgtggacataaatggtgggtggcccgataacggaaacctgatagcaggtggtcaaatatggatcttggagaggctctgatatcatct 50543568  T
Q  241 tagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||  | || ||||| || || |||||  |||||||||   |||||| ||||||| |||||||||||||| ||||    
T  50543569 tagaaatcgtggttgggcctaacacaactccacaaaaccggcttgtgaggtgaggattgcccccacttatacacac 50543644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 4905644 - 4905703
Alignment:
Q  147 ggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||| |||||| ||||||||||||| |||||||||| |||||||||||||||||||    
T  4905644 ggcttgattcgtgaacataaatggtgggtggcccgatagcagaaacctaatagcaggtgg 4905703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 35788840 - 35788666
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattgga-tagactctgatatcaactt 241  Q
    |||||||||| | |||| | ||||||||||||| ||| |||| ||||||||| |||||||||||  || | ||| |||||  || |||||||| || |||    
T  35788840 attgggcttggttcgtggacataaatggtgggtggcctgataacggaaacctgatagcaggtggcccaacggatcttggaggaggctctgataccatctt 35788741  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||  | || ||||| || || |||||| || ||||||   |||||| ||||||| |||||||||||||||||||    
T  35788740 agaaatcgtggttgggcctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccacttataaacac 35788666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 25323899 - 25324025
Alignment:
Q  107 atgtgggactctttaacacccctct--tgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggt 204  Q
    ||||||| |||||||||||||| ||  || |||||| ||||||||||| |||||| |||||||||||||||   ||||| | |||||||||| || ||||    
T  25323899 atgtggggctctttaacacccccctcatgcccaacaccattgggcttggtgcgtggatataaatggtgggtgatccgatggtggaaacctaagagtaggt 25323998  T
Q  205 ggttcagcagatattggatagactctg 231  Q
    ||  || ||||| ||||| || |||||    
T  25323999 ggcccaacagatcttggagaggctctg 25324025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 25324173 - 25324236
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| |||||  ||||||||||||||| |||||||||||||||| | |||||||||||    
T  25324173 attgggcttggtgcgtagatataaatggtgggtggcccgatagcggaaacttgatagcaggtgg 25324236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 28245665 - 28245728
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| |||||||||||    
T  28245665 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcaggtgg 28245728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 5398310 - 5398408
Alignment:
Q  105 caatgtgggactcttta-acacccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcag 202  Q
    ||||||||||||||| | |||||||||  | ||||||| |||||||||| | |||| | ||||||||||||| | ||||||| |||||||| |||||||    
T  5398310 caatgtgggactcttaacacacccctcacgaccaacattattgggcttggttcgtggacataaatggtgggtggtccgataggggaaacctgatagcag 5398408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 205
Target Start/End: Complemental strand, 4645821 - 4645760
Alignment:
Q  144 ttgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||||||| |||| | |||| |||||||| |||||||||||||||||| ||||||||||    
T  4645821 ttgggcttgattcgtggacataattggtgggtggcccgatagcggaaacctgatagcaggtg 4645760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 264 - 325
Target Start/End: Original strand, 6666225 - 6666286
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcagg 325  Q
    |||||| |||||||||  ||||||| ||||||| |||||||| |||||||||||||||||||    
T  6666225 acaaccccacaaaacctgtttgtgaggtgaggattgcccccaattataaacacttattcagg 6666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 324
Target Start/End: Original strand, 6666539 - 6666720
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| ||| || |||||||||||||||  ||||||||  ||| ||| |||||||||||  || ||||| ||| | ||  ||| ||| || ||||    
T  6666539 attgggcttggtgcatggatataaatggtgggtgacccgatagaagaatccttatagcaggtggcccaacagatcttgtagaggttctaataccatctta 6666638  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcag 324  Q
    ||  | || ||||| || ||||||| | |||||||||  ||||||| || |||| |||||||||||  |||||||| |||||    
T  6666639 gaaatcgtggttgggcctaaaacaatcccacaaaaccggtttgtgaggtaaggattgcccccacttgaaaacacttgttcag 6666720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 315
Target Start/End: Original strand, 35819032 - 35819204
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | |||||||||||||  ||||||||||||||||| |||||||||||  ||   ||| || || ||||||||||  || ||||    
T  35819032 attgggcttggttcgtggacataaatggtgggtgacccgatagcggaaacctgatagcaggtggcccaatggatcttagagagactctgatgccatctta 35819131  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
     |  | || ||||| || || |||||||||||||||    |||||| | ||||| ||||||||| ||||||||    
T  35819132 aaaatcgtggttgggcctaacacaacctcacaaaactggcttgtgaggcgaggattgcccccacatataaaca 35819204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 36686065 - 36686108
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  36686065 ataaatggtgggtggcccgatagcggaaacctgatagcaggtgg 36686108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 35609515 - 35609569
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacactt 318  Q
    |||||| ||||||||| | |||||| ||||||| |||||||||||||||||||||    
T  35609515 acaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaacactt 35609569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 20726741 - 20726786
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcgg 188  Q
    |||||||||| |||||| ||||||||||||||| ||||||||||||    
T  20726741 attgggcttggtgcgtggatataaatggtgggtggcccgatagcgg 20726786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 35485331 - 35485234
Alignment:
Q  219 tggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||| ||||||| ||| || |||||| ||||| |||||  | || |||||| ||||||||||   ||| | |||||||||||||||||||||||||||    
T  35485331 tggacagactctaataccatcttagattttgtagttgggtctaacacaaccccacaaaaccagcgtgtaaggtgaggactgcccccacttataaacac 35485234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 49190120 - 49190189
Alignment:
Q  180 cgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttg 249  Q
    ||||||||||||||||| |||||||||| || | ||| |||||||| |||||||| || |||||| ||||    
T  49190120 cgatagcggaaacctaaaagcaggtggtccaacggatcttggataggctctgataccatcttagaatttg 49190189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 7572615 - 7572675
Alignment:
Q  147 ggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    |||||| ||| || ||||||||||||||| |||| ||||||||||||| |||| |||||||    
T  7572615 ggcttggtgcatggatataaatggtgggtggcccaatagcggaaacctgatagaaggtggt 7572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 13637448 - 13637396
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||| ||||||||||| || |||||| ||||||||||||    
T  13637448 acaaccccacaaaaccaaattgtgaagtgaagattgcccctacttataaacac 13637396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 35796767 - 35796819
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||   |||||| ||||||| |||||||||||||||||||    
T  35796767 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 35796819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 39902588 - 39902640
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||  |||||| ||||||| |||||||||||||||||||    
T  39902588 acaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 39902640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 5398634 - 5398677
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| | |||||||||||||||| |||||||||||    
T  5398634 ataaatggtgggtggtccgatagcggaaacctgatagcaggtgg 5398677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 6778602 - 6778649
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttca 210  Q
    |||||||| |||| |||||||||||||||||| |||||| ||||||||    
T  6778602 ataaatggggggtggcccgatagcggaaacctgatagcatgtggttca 6778649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 9685457 - 9685406
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||||||||||||| | |||||| ||||||| || |||||||||||||||    
T  9685457 acaacctcacaaaaccgacttgtgaggtgaggattggccccacttataaaca 9685406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 11783817 - 11783868
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| |||||||||||||||||| ||||||| | |||| |||||||||||    
T  11783817 acaaccccacaaaaccaatttgtgaggtgaggattacccctacttataaaca 11783868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 315
Target Start/End: Complemental strand, 16066116 - 16066073
Alignment:
Q  272 acaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||    
T  16066116 acaaaaccagtttgtgaggtgaggattgcccccacttataaaca 16066073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 325
Target Start/End: Original strand, 50870531 - 50870566
Alignment:
Q  290 gtgaggactgcccccacttataaacacttattcagg 325  Q
    ||||||||||||||||||||||||||||| ||||||    
T  50870531 gtgaggactgcccccacttataaacacttgttcagg 50870566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 53814954 - 53815005
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| ||||||||| | |||||| ||||||| ||||||||||||||||||    
T  53814954 acaaccccacaaaaccgacttgtgaggtgaggattgcccccacttataaaca 53815005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 22822531 - 22822357
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggat-agactctgatatcaactt 241  Q
    ||||| |||| |||||| || || |||||| || |||||||||||||||||| ||||||||| |  || |   | ||| |  || ||||||||  | |||    
T  22822531 attggacttggtgcgtggatgtatatggtgagtggcccgatagcggaaacctgatagcaggtagcccaacgagtcttgtaggaggctctgatacaatctt 22822432  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||| ||||| |||||||| || |||||| |||||||||   |||||  ||||||| | |||||||||||||||||    
T  22822431 agaatttgtggttggacctaatacaaccgcacaaaaccggcttgtgtggtgaggatttcccccacttataaacac 22822357  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 318
Target Start/End: Original strand, 48052817 - 48052871
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacactt 318  Q
    |||||| ||||||||||  |||||| ||||||||||| ||||||| |||||||||    
T  48052817 acaaccccacaaaaccagcttgtgaggtgaggactgctcccacttgtaaacactt 48052871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 25716067 - 25716010
Alignment:
Q  149 cttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||||||||||||||||||||  | |||| |||||||  | |||||||||||    
T  25716067 cttgatgcgtgaatataaatggtgggtgactcgattgcggaaatttgatagcaggtgg 25716010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 400590 - 400642
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||   |||||| ||||||| | |||||||||||||||||    
T  400590 acaacctcacaaaaccggcttgtgaggtgaggatttcccccacttataaacac 400642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 11036673 - 11036713
Alignment:
Q  166 aatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| ||| ||||||||||||||||||| ||||||    
T  11036673 aatggtgggtggcctgatagcggaaacctaatagtaggtgg 11036713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 22231086 - 22231150
Alignment:
Q  252 gttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||| || |||||| |||||||||   |||||| ||||||| || ||||||||||||||||    
T  22231086 gttggacctaatacaaccccacaaaaccggcttgtgaggtgaggattgtccccacttataaacac 22231150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 28245551 - 28245603
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  28245551 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 28245603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 28246110 - 28246162
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  28246110 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 28246162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 31254436 - 31254484
Alignment:
Q  268 cctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||  ||||| | ||||||| |||||||||||||||||||    
T  31254436 cctcacaaaaccggtttgtaaggtgaggattgcccccacttataaacac 31254484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 329
Target Start/End: Original strand, 32333956 - 32334000
Alignment:
Q  285 gtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    |||||||||||| || |||||||||||||||| | ||||||||||    
T  32333956 gtgaagtgaggattgtccccacttataaacacatgttcaggtcat 32334000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 42842147 - 42842195
Alignment:
Q  144 ttgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaac 192  Q
    |||||||||||||||| ||||||||||| ||| | | ||||||||||||    
T  42842147 ttgggcttgatgcgtggatataaatggttggtggtcggatagcggaaac 42842195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 143 - 277
Target Start/End: Complemental strand, 27413527 - 27413393
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||||| |||| | ||||||||||||| ||||||||||||||| || ||| ||||||||  |  |||| ||||| || ||||||||||| ||||    
T  27413527 attgggcttgattcgtggacataaatggtgggtggcccgatagcggaaatctgataacaggtggtctaatagatcttggagaggctctgatatcatctta 27413428  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaa 277  Q
    ||  | || |||||||| || ||||||||||||||    
T  27413427 gaaatcgtggttggacctaacacaacctcacaaaa 27413393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 135 - 316
Target Start/End: Original strand, 4098299 - 4098479
Alignment:
Q  135 ccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgata 234  Q
    ||||||| |||||||||| | |||| | ||||| ||||||| |||||||||| ||||||| || ||||||||  ||   ||| ||| | || ||||||||    
T  4098299 ccaacattattgggcttggttcgtggacataaagggtgggtggcccgatagcagaaacctgattgcaggtggcccaatggatcttgaagagtctctgata 4098398  T
Q  235 tcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||||||  | || ||||| || || |||||| ||||||||||| |||| | ||||||| |||||||||||||||||||    
T  4098399 ccaacttagaaatcgtggttgggcctaacacaacc-cacaaaaccaacttgtaaggtgaggattgcccccacttataaacac 4098479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 143 - 313
Target Start/End: Original strand, 25145624 - 25145794
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||| ||||||| |||| | || |||||||||| | |||||| ||||||||| ||||||||||| |||  |||| ||||| || ||||||||||| ||||    
T  25145624 attgagcttgattcgtggacattaatggtgggtggtccgataacggaaacctgatagcaggtgggtcaatagatcttggagaggctctgatatcatctta 25145723  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaa 313  Q
    ||  |  | ||||| || || |||||| |||||| ||   |||||| ||||||| |||||||||| |||||    
T  25145724 gaaatcatggttgggcctaacacaaccccacaaatccggcttgtgaggtgaggattgcccccactaataaa 25145794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 312
Target Start/End: Complemental strand, 26177088 - 26176919
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    ||||| |||| | |||| ||||||||||||||| | ||||||||||||| || |||||||||||  ||   ||| ||||| || ||||||||||| ||||    
T  26177088 attggacttggttcgtggatataaatggtgggtggtccgatagcggaaatctgatagcaggtggcccaatggatcttggagaggctctgatatcatctta 26176989  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataa 312  Q
    ||  | |  ||||| || || |||||| |||||||||  ||| ||| ||||||| ||||| |||||||||    
T  26176988 gaaatcgcggttgggcctaacacaaccccacaaaaccggtttttgaggtgaggattgccctcacttataa 26176919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 17208734 - 17208675
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcag 202  Q
    |||||||||| || ||| ||||||||||||||| |||||||||||||||||| |||||||    
T  17208734 attgggcttggtgggtggatataaatggtgggtggcccgatagcggaaacctgatagcag 17208675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 33156914 - 33156852
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    |||||||||||| |||| | ||||||||||| | |||||||||||||||||| ||||||||||    
T  33156914 attgggcttgattcgtggacataaatggtggatggcccgatagcggaaacctgatagcaggtg 33156852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 39348256 - 39348429
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggat-agactctgatatcaactt 241  Q
    |||||||||| | |||| | ||||||||||||| | ||||||| |||||||| |||||||||||  ||   ||  |||||  || |||||||| || |||    
T  39348256 attgggcttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatagcaggtggcccaatggaccttggaggaggctctgataccatctt 39348355  T
Q  242 agactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||  | || ||||| || || |||||| |||||||||  ||||||| ||||||| |||||||||||||||||||    
T  39348356 agaaatcgt-gttgggcctaacacaaccccacaaaaccggtttgtgaggtgaggattgcccccacttataaacac 39348429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 4112930 - 4113083
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| | || ||||||||||||| ||||  ||||| |||   ||| ||||| || ||| |||| || ||||||  | || ||||| || ||    
T  4112930 ataaatggtgggtggtccaatagcggaaacctgatagatggtggctcaatggatcttggagaggctccgataccatcttagaaatcgtggttgggcctaa 4113029  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  4113030 cacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 4113083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 30369995 - 30369843
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| ||||||||| |||||||| ||||||||||   ||   ||| ||||| || ||||||||  | ||||||  | || ||||| || ||    
T  30369995 ataaatggtgggtggcccgatagtggaaacctgatagcaggtgacccaatggatcttggagaggctctgatacaatcttagaaatcgtggttgggcctaa 30369896  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
     |||||| |||||||| |  |||||| ||||||| |||||| |||||||||||    
T  30369895 cacaaccccacaaaactatcttgtgaggtgaggattgcccctacttataaaca 30369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 2859531 - 2859594
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| |||||||||| |||||||||||| ||||||    
T  2859531 attgggcttggttcgtggacataaatggtgggtggcccgatagcagaaacctaatagaaggtgg 2859594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 11524980 - 11524882
Alignment:
Q  107 atgtgggactctttaacacccc--tcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcagg 203  Q
    ||||||||||||||||||||||  || || ||||||  ||| | |||| |||||| |||||||| |||||| ||| ||||||| |||||| ||||||||    
T  11524980 atgtgggactctttaacacccccatcatgcccaacactattagacttggtgcgtggatataaatagtgggtggccagatagcgaaaacctgatagcagg 11524882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 203
Target Start/End: Complemental strand, 11525195 - 11525097
Alignment:
Q  107 atgtgggactctttaacacccc--tcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcagg 203  Q
    ||||||||||||||||||||||  || || ||||||  ||| | |||| |||||| |||||||| |||||| ||| ||||||| |||||| ||||||||    
T  11525195 atgtgggactctttaacacccccatcatgcccaacactattagacttggtgcgtggatataaatagtgggtggccagatagcgaaaacctgatagcagg 11525097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 25713338 - 25713275
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||| | |||||||||||    
T  25713338 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacttgatagcaggtgg 25713275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 35772209 - 35772150
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcag 202  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||||||||| |||||||    
T  35772209 attgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatagcag 35772150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 165 - 316
Target Start/End: Original strand, 51460368 - 51460519
Alignment:
Q  165 aaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaaaa 264  Q
    ||||||||||| |||||||||||||||||| |||||||||||  ||   ||| ||||| || |||||||||||  |||||  || | ||||| || || |    
T  51460368 aaatggtgggtcgcccgatagcggaaacctgatagcaggtggcccaatggatcttggagaggctctgatatcattttagaaattatggttgggcctaaca 51460467  T
Q  265 caacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||| ||||||||    |||| |||||| || | || ||||||||||||||    
T  51460468 caaccccacaaaactggcttgtaaagtgaagattaccaccacttataaacac 51460519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 325
Target Start/End: Original strand, 31181513 - 31181599
Alignment:
Q  239 cttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcagg 325  Q
    |||||| ||||| ||||| || || |||||| || |||||||  |||||| ||||||| ||||||||||||||||||| | ||||||    
T  31181513 cttagaatttgtggttgggcctaacacaaccccataaaaccagcttgtgaggtgaggattgcccccacttataaacacatgttcagg 31181599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 7465689 - 7465729
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacacttattca 323  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  7465689 ttgtgaggtgaggattgcccccacttataaacacttattca 7465729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 15986346 - 15986410
Alignment:
Q  252 gttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||| || |||||| ||||| ||||  |||||| ||||||| |||||||||||||||||||    
T  15986346 gttggacctaacacaaccccacaataccagcttgtgaggtgaggattgcccccacttataaacac 15986410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 25145510 - 25145562
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||||||||||| | |||||| ||||||| |||||||||| ||||||||    
T  25145510 acaacctcacaaaaccgacttgtgaggtgaggattgcccccactaataaacac 25145562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 52650796 - 52650848
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||  |||||| ||||||| |||||||||||||||||||    
T  52650796 acaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 52650848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 52907443 - 52907391
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||||  |||||| ||||||| |||||||||||||||||||    
T  52907443 acaaccccacaaaaccagcttgtgaggtgaggattgcccccacttataaacac 52907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 11524823 - 11524784
Alignment:
Q  290 gtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  11524823 gtgaggattgcccgcacttataaacacttattcaggtcat 11524784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 12244975 - 12245038
Alignment:
Q  252 gttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||||| || |||||| |||||||||   |||||| ||||||| ||||||||||||||||||    
T  12244975 gttggacctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 12245038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 16163093 - 16163050
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||| ||| |||||||||||||||||| |||||||||||    
T  16163093 ataaatggtaggtggcccgatagcggaaacctgatagcaggtgg 16163050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 27413641 - 27413590
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||| |||||| |||||||| ||||||| |||| |||||||||||||    
T  27413641 acaacctcataaaaccgatttgtgaggtgaggattgcctccacttataaaca 27413590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 288
Target Start/End: Complemental strand, 38733293 - 38733186
Alignment:
Q  181 gatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaacca 280  Q
    |||||||||||||| |||||||||||| ||   ||| ||||| ||||||||||| || ||||||  | || |||| ||| || |||| |||||||||||     
T  38733293 gatagcggaaacctgatagcaggtggtccaatggatcttggagagactctgataccatcttagaaatcgtggttgaacctaacacaatctcacaaaaccg 38733194  T
Q  281 atttgtga 288  Q
    | ||||||    
T  38733193 acttgtga 38733186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 52961507 - 52961464
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||| |||||||| |||||||||||||||||| |||||||||||    
T  52961507 ataactggtgggtggcccgatagcggaaacctgatagcaggtgg 52961464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 282 - 316
Target Start/End: Complemental strand, 34076678 - 34076644
Alignment:
Q  282 tttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||||||||||||| |||||||    
T  34076678 tttgtgaagtgaggactgcccccacttttaaacac 34076644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 316
Target Start/End: Original strand, 4098195 - 4098240
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||||  ||||||||| ||||| |||||||||||||||||||    
T  4098195 cacaaaaccggtttgtgaagagaggattgcccccacttataaacac 4098240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 4112699 - 4112780
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttaga 244  Q
    ||||||||||||| |  ||||||||||||||| |||||||||||| ||   ||| ||||| || |||||||| || ||||||    
T  4112699 ataaatggtgggtggttcgatagcggaaacctgatagcaggtggtccaatggatcttggagaggctctgataccatcttaga 4112780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 12376470 - 12376527
Alignment:
Q  272 acaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    |||||||| | ||||||||||| || ||||||||||||||||||| | |||| |||||    
T  12376470 acaaaaccgacttgtgaagtgaagattgcccccacttataaacacatgttcatgtcat 12376527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 31004470 - 31004523
Alignment:
Q  272 acaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcagg 325  Q
    |||||||||  |||||| ||||||| ||||||||||||||||||| | ||||||    
T  31004470 acaaaaccagcttgtgaggtgaggattgcccccacttataaacacatgttcagg 31004523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Complemental strand, 40079211 - 40079146
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    |||||| |||||||||   |||||| ||||||| ||||||||||||||||||| |  |||||||||    
T  40079211 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaggtcat 40079146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 369812 - 369752
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggt-agcccgatagcggaaacctaatagcag 202  Q
    |||||||||| | |||| | ||||||||||||| | ||||||||||||||||| |||||||    
T  369812 attgggcttggttcgtggacataaatggtgggtgaccccgatagcggaaacctgatagcag 369752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 293
Target Start/End: Complemental strand, 5109412 - 5109280
Alignment:
Q  161 atataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggacca 260  Q
    |||||||||||||||  |||||||  |||||||| |||| |||||| ||| |  || ||||| ||||||||||| || |||| |  ||||  |||||||     
T  5109412 atataaatggtgggtgacccgataatggaaacctgatagaaggtggctcaacgaatcttggagagactctgataccatcttaaaaattgtaattggacct 5109313  T
Q  261 aaaacaacctcacaaaaccaatttgtgaagtga 293  Q
    || |||| | ||||||| ||| |||||| ||||    
T  5109312 aacacaatcccacaaaaacaacttgtgaggtga 5109280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 21765156 - 21765113
Alignment:
Q  290 gtgaggactgcccccacttataaacacttattcaggtcatatcac 334  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||    
T  21765156 gtgaggactgcccc-acttataaacacttgatcaggtcatatcac 21765113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 26173380 - 26173424
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    ||||||||||||  | |||||||||||||||| ||||||||||||    
T  26173380 ataaatggtggggggtccgatagcggaaacctgatagcaggtggt 26173424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 31496295 - 31496339
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    ||||||||||||| | |||||||||| ||||| ||||||||||||    
T  31496295 ataaatggtgggtggtccgatagcgggaacctgatagcaggtggt 31496339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 5658 - 5831
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| | |||||||||||||||| ||||||||||| |||   ||| ||||| || |||||||| || ||||    
T  5658 attgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagcaggtggctcaatggatcttggagaggctctgataccatctta 5757  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| | |||||||   ||||||  |||||| |||||||||||||||||||    
T  5758 gaaatcgtggttgggcctaacacaaccccgcaaaaccggcttgtgagatgaggattgcccccacttataaacac 5831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 316
Target Start/End: Original strand, 5588 - 5621
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||||||||||| |||||||||||||||||||    
T  5588 ttgtgaagtgaggattgcccccacttataaacac 5621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 4155484 - 4155331
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||| ||||||| |||||||||||||||||| |||||||||||  ||    || ||||| ||||||||||| || ||||||  | || ||||| || ||    
T  4155484 ataaacggtgggtggcccgatagcggaaacctgatagcaggtggcccaatgaatcttggagagactctgataccatcttagaaatcgtggttgggcctaa 4155385  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||| |||||||||   || ||| ||||||| |||||||||||||||||||    
T  4155384 cacaaccccacaaaaccggcttttgaggtgaggattgcccccacttataaacac 4155331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 45828179 - 45828027
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| || |||||||||||||||  ||||||||||  ||   ||| ||||| || |||||||| || ||||||  |||| || || || ||    
T  45828179 ataaatggtgggtggctcgatagcggaaacctggtagcaggtggcgcaatggatcttggagaggctctgataccatcttagaaattgtggtagggcctaa 45828080  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
     ||||||||||||||||   |||||| ||||||| |||||| |||||||||||    
T  45828079 cacaacctcacaaaaccggcttgtgaggtgaggattgccccaacttataaaca 45828027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 35038333 - 35038505
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| ||| |||||||||||||| || ||||||||  ||   ||| ||||| || | |||||| || ||||    
T  35038333 attgggcttggttcgtggacataaatggtgggtggcc-gatagcggaaacctgattgcaggtggcccaatggatcttggagaggcactgataccatctta 35038431  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| ||||||||||  |||| | ||||||| |||||||||||||||||||    
T  35038432 gaagtcgtggttgggcctaacacaaccccacaaaaccagcttgtcaggtgaggattgcccccacttataaacac 35038505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 22775538 - 22775601
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||| ||| ||| || ||||||||||||||| |||||||||| |||||||||||||||||||    
T  22775538 attgggattggtgcatggatataaatggtgggtggcccgatagcagaaacctaatagcaggtgg 22775601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 21888595 - 21888525
Alignment:
Q  133 gtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcagg 203  Q
    ||||||||  |||||| |||||| ||| ||||||||||||||| | |||||||||||||||| ||||||||    
T  21888595 gtccaacactattggggttgatgtgtggatataaatggtgggtggtccgatagcggaaacctgatagcagg 21888525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 218 - 316
Target Start/End: Complemental strand, 22729205 - 22729107
Alignment:
Q  218 ttggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||  ||||||| || ||||||  |||| ||||| || || ||||||||||||||||   |||||||||||||| ||||||||||| |||||||    
T  22729205 ttggataggatctgataccatcttagaaattgtggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaacac 22729107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 183 - 316
Target Start/End: Complemental strand, 54568032 - 54567899
Alignment:
Q  183 tagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaat 282  Q
    |||||||||||| ||||||||||| |||   ||| ||||| || |||||||| || ||||||  | || ||||| || || |||||| |||||||||       
T  54568032 tagcggaaacctgatagcaggtggctcaatggatcttggagaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggc 54567933  T
Q  283 ttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||| | |||||||||||||||||    
T  54567932 ttgtgaggtgaggatttcccccacttataaacac 54567899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 315
Target Start/End: Original strand, 20327773 - 20327925
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| |||||||||||||||||| |||||||||||  ||   ||| || || || | |||||| ||  |||||  |  | ||||| || ||    
T  20327773 ataaatggtgggtggcccgatagcggaaacctgatagcaggtggcccaatggattttagagaggcactgataccatattagaaatcatggttgggcctaa 20327872  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
     |||||| |||||||||   |||||| ||||||| ||||||||||||||||||    
T  20327873 cacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 20327925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 9273254 - 9273203
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||| ||||||||||  |||||||||||||| ||||||||||||||||||    
T  9273254 acaaccccacaaaaccagcttgtgaagtgaggattgcccccacttataaaca 9273203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 46139442 - 46139380
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    |||||||||| |  ||||| ||||||||||||| |||||||||| ||||||| ||||||||||    
T  46139442 attgggcttggtttgtgaacataaatggtgggtggcccgatagcagaaacctgatagcaggtg 46139380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 34678617 - 34678674
Alignment:
Q  180 cgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatca 237  Q
    ||||| || |||||||||||||||||||||| || || ||||||||| ||||||||||    
T  34678617 cgatatcgaaaacctaatagcaggtggttcaacaaatcttggatagattctgatatca 34678674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 35018616 - 35018483
Alignment:
Q  182 atagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaa 281  Q
    ||||||||||||| |||||| |||   || | ||| |||||||| ||||||||||| |||||| ||||| ||||| || ||  | |||| ||||| |||     
T  35018616 atagcggaaaccttatagcaagtgacccaacggatcttggataggctctgatatcatcttagaatttgtggttgggcctaactcgaccttacaaacccag 35018517  T
Q  282 tttgtgaagtgaggactgcccccacttataaaca 315  Q
     |||| | |||||||  |||||||||||||||||    
T  35018516 cttgtaaggtgaggatggcccccacttataaaca 35018483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 50930761 - 50930709
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||  ||||||| ||||||| |||||||||||||||||||    
T  50930761 acaaccccacaaaaccgttttgtgaggtgaggattgcccccacttataaacac 50930709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 13574824 - 13574887
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | |||||||||||||  | ||||||||||||||| |||||||||||    
T  13574824 attgggcttggttcgtggacataaatggtgggtgacacgatagcggaaacctgatagcaggtgg 13574887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 23691217 - 23691268
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23691217 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 23708017 - 23708068
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23708017 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23708068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 23726473 - 23726524
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23726473 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23726524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 23744929 - 23744980
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23744929 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23744980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 24063454 - 24063505
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||||||||||||   |||||| ||||||| ||||||||||||||||||    
T  24063454 acaacctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 24063505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 31151024 - 31150961
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| ||| || |||||||||||| ||  ||||||| |||||||||||||||| ||||    
T  31151024 attgggcttggtgcatgtatataaatggtgagtgacccgataacggaaacctaatagcaagtgg 31150961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 34992786 - 34992723
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | |||||||||||||  ||||| ||||||||||| |||||||||||    
T  34992786 attgggcttggttcgtggacataaatggtgggtgacccgacagcggaaacctgatagcaggtgg 34992723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 20303223 - 20303265
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||||||||| | |||||||||||||||| ||||||||||    
T  20303223 ataaatggtgggtggaccgatagcggaaacctgatagcaggtg 20303265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 21809064 - 21809106
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    ||||||| ||||||| |||||||||||||||| ||||||||||    
T  21809064 ataaatgatgggtagtccgatagcggaaacctgatagcaggtg 21809106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 23708238 - 23708300
Alignment:
Q  253 ttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||| || |||| |||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23708238 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23708300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 23726694 - 23726756
Alignment:
Q  253 ttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||| || |||| |||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23726694 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23726756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 23745150 - 23745212
Alignment:
Q  253 ttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||| || |||| |||||||||||   |||||| ||||||| ||||||||||||||||||    
T  23745150 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 23745212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Original strand, 24063675 - 24063737
Alignment:
Q  253 ttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    ||||||| || |||| |||||||||||   |||||| ||||||| ||||||||||||||||||    
T  24063675 ttggacctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 24063737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 313
Target Start/End: Complemental strand, 1800274 - 1800225
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaa 313  Q
    |||||| |||||||||  ||||||| ||||||| ||||||||||||||||    
T  1800274 acaaccccacaaaaccggtttgtgaggtgaggattgcccccacttataaa 1800225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 315
Target Start/End: Original strand, 1723064 - 1723152
Alignment:
Q  227 ctctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||||| || ||||||  | || ||||| || || |||||| |||||||||   |||||| ||||||| ||||||||||||||||||    
T  1723064 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 1723152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 328
Target Start/End: Complemental strand, 18757901 - 18757837
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtca 328  Q
    |||||| |||||||||   |||||| |||||||  |||||||||||||||||| || ||||||||    
T  18757901 acaaccccacaaaaccgccttgtgatgtgaggatcgcccccacttataaacacatagtcaggtca 18757837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 45138827 - 45138879
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  45138827 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 45138879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 2096 - 1923
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | |||||||||||||  | ||||||||||||||| ||| |||||||  ||   ||| ||||| || |||||||| || ||||    
T  2096 attgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatctta 1997  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| |||||||||||||||||||    
T  1996 gaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacac 1923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 11232333 - 11232506
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | |||||||||||||  | ||||||||||||||| ||| |||||||  ||   ||| ||||| || |||||||| || ||||    
T  11232333 attgggcttggttcgtggacataaatggtgggtgactcgatagcggaaacctgataacaggtggcccaatggatcttggagaggctctgataccatctta 11232432  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||| | ||||||| |||||||||||||||||||    
T  11232433 gaaatggtggttgggcctaacacaaccccacaaaaccggcttgtaaggtgaggattgcccccacttataaacac 11232506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 20301421 - 20301268
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| | |||||||||||||||| |||||||||||  ||   ||| ||| | || |||||||| || ||||||  | || ||||| || ||    
T  20301421 ataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaa 20301322  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||||||||||||    |||||| || |||| |||||||||||||||||||    
T  20301321 cacaacctcacaaaacgggcttgtgaggttaggattgcccccacttataaacac 20301268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 163 - 316
Target Start/End: Complemental strand, 21088053 - 21087900
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| | |||||||||||||||| |||||||||||  ||   ||| ||| | || |||||||| || ||||||  | || ||||| || ||    
T  21088053 ataaatggtgggtggtccgatagcggaaacctgatagcaggtggcccaatggatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaa 21087954  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||||||||||||    |||||| || |||| |||||||||||||||||||    
T  21087953 cacaacctcacaaaacgggcttgtgaggttaggattgcccccacttataaacac 21087900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 143 - 316
Target Start/End: Original strand, 39052833 - 39053006
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | ||||||||||||| ||| |||||||||||||| |||||||| ||   |   ||| ||||| || |||| ||| || ||||    
T  39052833 attgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagcagggggccaaatggatcttggagaggctctaataccatctta 39052932  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||  | || ||||| || || |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  39052933 gaaatcgttgttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 39053006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 8466627 - 8466690
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| |||||| ||||||||||||||| ||  |||||||||||||| |||||||||||    
T  8466627 attgggcttggtgcgtgcatataaatggtgggtggcttgatagcggaaacctgatagcaggtgg 8466690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 35682940 - 35682983
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  35682940 ataaatggtgggtggcccgatagcggaaacctaatagcaggtgg 35682983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Complemental strand, 39960137 - 39960074
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | |||||||||||||||| ||||||||||||||| |||||||||||    
T  39960137 attgggcttggttcgtggacataaatggtgggtagctcgatagcggaaacctgatagcaggtgg 39960074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 207
Target Start/End: Original strand, 3157148 - 3157212
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggt 207  Q
    |||||||||| | |||| | |||||||||||||  ||||||||||||||||| ||||||||||||    
T  3157148 attgggcttggttcgtggacataaatggtgggtgtcccgatagcggaaacctgatagcaggtggt 3157212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 242
Target Start/End: Original strand, 3157463 - 3157562
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||| | |||| | |||||||||||||  |||||||||| |||||| |||||||||||| ||   ||| ||||| || ||||||||||| ||||    
T  3157463 attgggcttggttcgtggacataaatggtgggtgtcccgatagcgaaaacctgatagcaggtggtccaatggattttggagaggctctgatatcatctta 3157562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 18004253 - 18004296
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  18004253 ataaatggtgggtggcccgatagcggaaacctgatagcaggtgg 18004296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 39052676 - 39052739
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||| | |||| | ||||||||||||| ||| |||||||||||||| |||||||||||    
T  39052676 attgggcttggttcgtggacataaatggtgggtggccggatagcggaaacctgatagcaggtgg 39052739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 316
Target Start/End: Original strand, 5590347 - 5590445
Alignment:
Q  218 ttggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||  ||||||| ||  |||||  |||| ||||| || || ||||||||||||||||   |||||||||||||| ||||||||||| |||||||    
T  5590347 ttggataggatctgataccattttagaaattgtggttgggcctaacacaacctcacaaaaccggcttgtgaagtgaggattgcccccacttgtaaacac 5590445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 41790818 - 41790653
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| || ||||||||||||||| |||||||||||  ||   ||| ||| | || |||||||| || ||||||  | || ||||| || ||    
T  41790818 ataaatggtgggtggctcgatagcggaaacctgatagcaggtggcccaatggatcttgaagaggctctgataccatcttagaaatcgtggttgggcctaa 41790719  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
     |||||| |||||||||   || ||| ||||||| || |||||||||||||||| |  |||||||||    
T  41790718 cacaacc-cacaaaaccggcttatgaggtgaggattgtccccacttataaacacattgtcaggtcat 41790653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 5932108 - 5932261
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaa 262  Q
    ||||||||||||| |||||||| ||||||| | |||| ||||||| ||   ||| ||||| || |||||||| || |||| |  | || ||||| || ||    
T  5932108 ataaatggtgggtggcccgataacggaaacgtgatagtaggtggtccaatggatcttggagaggctctgataccatcttaaaaatggtggttgggcctaa 5932207  T
Q  263 aacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||| ||||||||    |||||| ||||||  |||||||||||||||||||    
T  5932208 cacaaccccacaaaacaggcttgtgaggtgaggcttgcccccacttataaacac 5932261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 271 - 316
Target Start/End: Complemental strand, 7669693 - 7669648
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||| |||||| ||||||| |||||||||||||||||||    
T  7669693 cacaaaaccaacttgtgaggtgaggattgcccccacttataaacac 7669648  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 38475831 - 38475747
Alignment:
Q  239 cttagactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattca 323  Q
    |||||| ||||| ||||| || || ||||||  ||||||||   |||||| ||||||| ||||||||||||||||||||| ||||    
T  38475831 cttagaatttgtggttgggcctaacacaaccctacaaaaccggcttgtgaggtgaggattgcccccacttataaacacttgttca 38475747  T

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Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 18939322 - 18939373
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||||||||||||| ||  |||||| ||||||| ||||||||||||||||||    
T  18939322 acaacctcacaaaatcagcttgtgaggtgaggattgcccccacttataaaca 18939373  T

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Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 19472396 - 19472451
Alignment:
Q  151 tgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||| |||||||  |||| |||||||||||||||||| ||| |||||||    
T  19472396 tgatgcgtgaacataaatgacgggtggcccgatagcggaaacctgataacaggtgg 19472451  T

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Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 19543321 - 19543376
Alignment:
Q  151 tgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||| |||||||  |||| |||||||||||||||||| ||| |||||||    
T  19543321 tgatgcgtgaacataaatgacgggtggcccgatagcggaaacctgataacaggtgg 19543376  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 19589375 - 19589320
Alignment:
Q  151 tgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||| |||||||  |||| |||||||||||||||||| ||| |||||||    
T  19589375 tgatgcgtgaacataaatgacgggtggcccgatagcggaaacctgataacaggtgg 19589320  T

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Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 206
Target Start/End: Complemental strand, 31197774 - 31197731
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||||| | |||||||||||||||| |||||||||||    
T  31197774 ataaatggtgggtggtccgatagcggaaacctgatagcaggtgg 31197731  T

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Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 24532352 - 24532498
Alignment:
Q  170 gtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaacttagactttgtcgttggaccaaaaacaacc 269  Q
    |||||| |||||||||||||||||| |||||||||||  ||   ||| ||| |  | |||||||| || ||||||  |  | ||||| || || ||||||    
T  24532352 gtgggtggcccgatagcggaaacctgatagcaggtggcccaatggatcttgaaggggctctgataccatcttagaaatcatggttgggcctaacacaacc 24532451  T
Q  270 tcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
     |||||||||   |||||| |||| || |||||||||||||||||||    
T  24532452 ccacaaaaccggcttgtgaggtgatgattgcccccacttataaacac 24532498  T

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Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 38476260 - 38476174
Alignment:
Q  107 atgtgggactctttaacac-ccctcttgtccaacatcattgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaac 192  Q
    ||||||||||||| | ||| ||||| || |||| | ||||||||| | |||||| ||||||||||||||| || || ||||||||||    
T  38476260 atgtgggactcttcaccacaccctcatgcccaaaaccattgggctaggtgcgtggatataaatggtgggtggctcggtagcggaaac 38476174  T

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Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Complemental strand, 38476317 - 38476275
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacacttattcagg 325  Q
    |||||| ||||||| | ||||||||||||||||||||||||||    
T  38476317 ttgtgaggtgaggatttcccccacttataaacacttattcagg 38476275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 40014710 - 40014652
Alignment:
Q  271 cacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttattcaggtcat 329  Q
    ||||||||| | ||||||||||| || ||||||||||||||||||| | |||| |||||    
T  40014710 cacaaaaccgacttgtgaagtgaagattgcccccacttataaacacatgttcatgtcat 40014652  T

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Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 283 - 325
Target Start/End: Original strand, 44931226 - 44931268
Alignment:
Q  283 ttgtgaagtgaggactgcccccacttataaacacttattcagg 325  Q
    |||||| | ||||| ||||||||||||||||||||||||||||    
T  44931226 ttgtgaggcgaggattgcccccacttataaacacttattcagg 44931268  T

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Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 422379 - 422420
Alignment:
Q  165 aaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||||||||| |||||| ||||||||||| |||||||||||    
T  422379 aaatggtgggtggcccgagagcggaaacctgatagcaggtgg 422420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 315
Target Start/End: Complemental strand, 4828369 - 4828301
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaaca 315  Q
    |||| ||||| || || |||||| |||||||||   |||||| ||||||| ||||||||||||||||||    
T  4828369 ttgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaaca 4828301  T

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Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 26208167 - 26208215
Alignment:
Q  158 tgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    |||||||||||||||||| ||||| ||| | |||||| |||||||||||    
T  26208167 tgaatataaatggtgggtggcccgttagggaaaacctgatagcaggtgg 26208215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 38447452 - 38447504
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| |||||||||   |||||| ||||||| |||||||||||||||||||    
T  38447452 acaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacac 38447504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Original strand, 42049712 - 42049764
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||||||||||||||||   |||||  ||||||| |||||||||||||||||||    
T  42049712 acaacctcacaaaaccggcttgtggggtgaggattgcccccacttataaacac 42049764  T

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Target: scaffold0129 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 316
Target Start/End: Complemental strand, 14483 - 14310
Alignment:
Q  143 attgggcttgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtggttcagcagatattggatagactctgatatcaactta 242  Q
    |||||||||||| |||| | ||||||||| ||| |||||||||||||||||| ||| ||  |||  ||   ||| ||||| || |||||||| || ||||    
T  14483 attgggcttgattcgtggacataaatggtaggtggcccgatagcggaaacctgataacatatggcccaatggatcttggagaggctctgataccatctta 14384  T
Q  243 gactttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    ||    || ||||| || || |||||| |||||||||   |||||| |||| || || ||||||||||||||||    
T  14383 gaaaacgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgtccccacttataaacac 14310  T

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Target: scaffold0729 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0729
Description:

Target: scaffold0729; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 2654 - 2607
Alignment:
Q  163 ataaatggtgggtagcccgatagcggaaacctaatagcaggtggttca 210  Q
    |||||||| |||| |||||||||||||||||| |||||| ||||||||    
T  2654 ataaatggggggtggcccgatagcggaaacctgatagcatgtggttca 2607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 206
Target Start/End: Original strand, 87721 - 87776
Alignment:
Q  151 tgatgcgtgaatataaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||| ||| |||||||||||||||  |||||||| |||||||| |||||||||||    
T  87721 tgatgtgtggatataaatggtgggtgacccgatagtggaaacctgatagcaggtgg 87776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 205
Target Start/End: Original strand, 102299 - 102343
Alignment:
Q  161 atataaatggtgggtagcccgatagcggaaacctaatagcaggtg 205  Q
    |||||||||||||||  |||||||| |||||||| ||||||||||    
T  102299 atataaatggtgggtgacccgatagtggaaacctgatagcaggtg 102343  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 321
Target Start/End: Complemental strand, 67561 - 67487
Alignment:
Q  247 ttgtcgttggaccaaaaacaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacacttatt 321  Q
    |||| ||||||||||| |||||  ||||||| |  ||||| | ||||||| ||||||||||||||||||| ||||    
T  67561 ttgtggttggaccaaacacaactccacaaaatcggtttgtaaggtgaggattgcccccacttataaacacatatt 67487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 4003 - 3962
Alignment:
Q  165 aaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||| ||||| |||||||||||||||||| |||||||||||    
T  4003 aaatgatgggtggcccgatagcggaaacctgatagcaggtgg 3962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 4647 - 4606
Alignment:
Q  165 aaatggtgggtagcccgatagcggaaacctaatagcaggtgg 206  Q
    ||||| ||||| |||||||||||||||||| |||||||||||    
T  4647 aaatgatgggtggcccgatagcggaaacctgatagcaggtgg 4606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 316
Target Start/End: Complemental strand, 51295 - 51243
Alignment:
Q  264 acaacctcacaaaaccaatttgtgaagtgaggactgcccccacttataaacac 316  Q
    |||||| ||||||||  | |||||| ||||||| |||||||||||||||||||    
T  51295 acaaccccacaaaactgacttgtgaggtgaggattgcccccacttataaacac 51243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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