View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13582_high_2 (Length: 488)
Name: NF13582_high_2
Description: NF13582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13582_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 52605147 - 52604680
Alignment:
| Q |
1 |
ttgactcaaaaatttctaggtattatattcgatatctttnnnnnnnnnnnnagtttagattgtgaagatgaaattacaagaagtgatacttgtgatatgc |
100 |
Q |
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| T |
52605147 |
ttgactcaaaaatttctaggtattatattctatatcttttatata------agtttagattgtgaagatgaagttacaagaagtgatacttgtgatatgc |
52605054 |
T |
|
| Q |
101 |
attttgttttgggcttgtattgggtcaactacagtggcaaggaaaacagtttttgttggaaatttgtttgatggagcaaagaagaagaacagtagtagtg |
200 |
Q |
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| T |
52605053 |
attttattttgggcttgtattgggtcaactacagtggcaaggaaaacagtttttgttggaaatttgtttgatggagcaaagaagaagaacagtagcagtg |
52604954 |
T |
|
| Q |
201 |
tggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaacacgtcatcatcagaggacaaaagggttgt |
300 |
Q |
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| T |
52604953 |
tggcagtacttgatgatgatgttcacaaatgcaaccacaaaagaaaacacttgtcttcttgctacaacaacacgtcatcatcagaggacaaaagggtcgt |
52604854 |
T |
|
| Q |
301 |
tcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttttcaacaaacaagacatcatggaatggacatggac-aacatgttttctc |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
52604853 |
tcctacaggtccaaatccactacacaacaggtagtaaagtcatcaacgtttttcaacaaacaagacatcatggaatggacatggacaaacatgttttctc |
52604754 |
T |
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| Q |
400 |
ttccattaagtaatataggagtatgtaatgtaatatagttaagctgatttaatgtgtttgaattaacaggttat |
473 |
Q |
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| T |
52604753 |
ttccattaagtaatataggagtatgtaatgtaatatagttaagctgatttaatgtgtttgaattaacaggttat |
52604680 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 16905748 - 16905712
Alignment:
| Q |
298 |
tgttcctacaggtccaaatccactacacaacaggtag |
334 |
Q |
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| T |
16905748 |
tgttcctacaggtccaaatccattacataacaggtag |
16905712 |
T |
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