View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13582_high_6 (Length: 363)

Name: NF13582_high_6
Description: NF13582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13582_high_6
NF13582_high_6
[»] chr1 (4 HSPs)
chr1 (19-345)||(48064889-48065213)
chr1 (150-193)||(50692137-50692180)
chr1 (22-81)||(52561668-52561727)
chr1 (22-86)||(27520281-27520345)
[»] chr7 (3 HSPs)
chr7 (19-86)||(9210778-9210845)
chr7 (22-86)||(36136908-36136972)
chr7 (22-86)||(36239870-36239934)
[»] chr5 (2 HSPs)
chr5 (22-86)||(15168915-15168979)
chr5 (22-85)||(28026-28089)
[»] chr4 (3 HSPs)
chr4 (22-86)||(51421874-51421938)
chr4 (22-81)||(55809069-55809128)
chr4 (22-86)||(55237980-55238044)
[»] chr3 (4 HSPs)
chr3 (30-85)||(15296059-15296114)
chr3 (22-81)||(19676160-19676219)
chr3 (23-81)||(49042081-49042139)
chr3 (21-86)||(45289165-45289230)
[»] chr2 (1 HSPs)
chr2 (156-193)||(27503752-27503789)
[»] chr8 (1 HSPs)
chr8 (22-86)||(29520793-29520857)


Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 19 - 345
Target Start/End: Complemental strand, 48065213 - 48064889
Alignment:
Q  19 aggaaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgatttaatataaaacatcactcctttcggtcacaatta 118  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||    
T  48065213 aggaaaactataggagaaattgttaggaaaaatttcgaggttgatgaattggatccaaatatgatttaatataaaacattactcttttcagtcacaatta 48065114  T
Q  119 tnnnnnnnnnnnnnnn-------cttgtaagtttattaaatacgtaatgtatttgatctataatatatactacatacattagatagtcaaagaacccaac 211  Q
    |                      |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||        
T  48065113 taaaaaataaaaaaataaaaaaacttgtaagtttattaaatacgtaatgtatttgatctataatatatagtacatatattagatagtcaatgaacc---- 48065018  T
Q  212 aaataatttatttgggatgaaatatgacataattcgatccaactaaccaaactcatttaatggaataatatttgatcattgttatagtaattcaaaacac 311  Q
       ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48065017 ---taattt---tgggatgaaatatgacataattcgatccaactaaccaaactcatttaatggaataatatttgatcattgttatagtaattcaaaacac 48064924  T
Q  312 aaacccac-aacaaataaataactcaagcactatc 345  Q
    |||||||| || |||||||||||||||||||||||    
T  48064923 aaacccacaaaaaaataaataactcaagcactatc 48064889  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 50692180 - 50692137
Alignment:
Q  150 aatacgtaatgtatttgatctataatatatactacatacattag 193  Q
    |||||||||||||||||||||||||||||||| | |||||||||    
T  50692180 aatacgtaatgtatttgatctataatatataccaaatacattag 50692137  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 52561727 - 52561668
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatg 81  Q
    |||||||||||||||| |||| ||||| |||| |||||| |||| |||||||||||||||    
T  52561727 aaaactataagagaaactgttaggaaagatttagaggttaatgagttggatccaaatatg 52561668  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 27520345 - 27520281
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| | || | |||||||| ||| || ||||  |||||||||||||||||||    
T  27520345 aaaactataagagaaactattagaaaaaatttagagattaatgagctggatccaaatatgattta 27520281  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 9210845 - 9210778
Alignment:
Q  19 aggaaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    ||||||||||||||||||| | || |||||||||| |||||| |||| ||||||||||||||| ||||    
T  9210845 aggaaaactataagagaaacttttaggaaaaatttagaggttaatgagttggatccaaatatggttta 9210778  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 36136908 - 36136972
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| | |||||||| |||| || ||| |||||||||||||||||||| ||||    
T  36136908 aaaactataagagaaactatttggaaagatttagatgttaatgaattggatccaaatatggttta 36136972  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 36239934 - 36239870
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| | || |||||||||| ||| || | || ||||||||||||||| ||||    
T  36239934 aaaactataagagaaactattaggaaaaatttagagattaacgagttggatccaaatatgcttta 36239870  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 15168915 - 15168979
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| |||| |||||||||| |||||| || | ||||||||| ||||| ||||    
T  15168915 aaaactataagagaaactgttaggaaaaatttagaggttaataagttggatccagatatggttta 15168979  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 28026 - 28089
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattt 85  Q
    |||||||||||||||| | || ||||| |||| |||||| || | |||||||||||||||||||    
T  28026 aaaactataagagaaactattaggaaagatttagaggttaataagttggatccaaatatgattt 28089  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 51421874 - 51421938
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| | || ||||| |||| |||||| |||||||||||||||| ||| ||||    
T  51421874 aaaactataagagaaactattaggaaagatttagaggttaatgaattggatccaaaaatggttta 51421938  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 55809128 - 55809069
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatg 81  Q
    |||||||||||||||| |||| ||||| |||| |||||| |||| ||||||||| |||||    
T  55809128 aaaactataagagaaactgttaggaaagatttagaggttaatgagttggatccagatatg 55809069  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 55238044 - 55237980
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||| ||||||||||||| || ||| | ||||||| ||| |||| ||| ||||||||||||||||    
T  55238044 aaaattataagagaaattattaggatatatttcgatgttaatgagttgaatccaaatatgattta 55237980  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 15296059 - 15296114
Alignment:
Q  30 aagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattt 85  Q
    |||||||| | || ||||| |||| |||||| ||||||||||||||||||||||||    
T  15296059 aagagaaactattaggaaagatttagaggttaatgaattggatccaaatatgattt 15296114  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 19676219 - 19676160
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatg 81  Q
    |||||| ||||||||| | || |||||||||| |||||| |||| |||||||||||||||    
T  19676219 aaaactgtaagagaaactattaggaaaaatttagaggttaatgagttggatccaaatatg 19676160  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 49042081 - 49042139
Alignment:
Q  23 aaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatg 81  Q
    ||||||||||||||| | || ||||| |||| |||||| |||| |||||||||||||||    
T  49042081 aaactataagagaaactattaggaaagatttagaggttaatgagttggatccaaatatg 49042139  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 45289230 - 45289165
Alignment:
Q  21 gaaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    ||||||||||||||||| | || ||||| |||| ||| || |||| ||||||||||||||| ||||    
T  45289230 gaaaactataagagaaactattaggaaagatttagagattaatgagttggatccaaatatggttta 45289165  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 27503752 - 27503789
Alignment:
Q  156 taatgtatttgatctataatatatactacatacattag 193  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  27503752 taatatatttgatatataatatatactacatacattag 27503789  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Original strand, 29520793 - 29520857
Alignment:
Q  22 aaaactataagagaaattgtttggaaaaatttcgaggttgatgaattggatccaaatatgattta 86  Q
    |||||||||||||||| |||| ||||  |||| ||| || |||| ||||||||||||||| ||||    
T  29520793 aaaactataagagaaactgttaggaacgatttagagattaatgagttggatccaaatatggttta 29520857  T

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