View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13582_low_1 (Length: 523)
Name: NF13582_low_1
Description: NF13582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13582_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 70 - 522
Target Start/End: Original strand, 28747293 - 28747751
Alignment:
| Q |
70 |
ctgcagaaaactattggttggttaatggttaaagctctatttaactactatttggaacaaaattatgaaataacttgctcaataattgaaatttaatttg |
169 |
Q |
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| T |
28747293 |
ctgcagaaaactattggttggttaatggctaaagctctatttaactactatttggaacaaaattatgaaataacttgctcaatagtagaaatttaatttg |
28747392 |
T |
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| Q |
170 |
ttagtaacnnnnnnnnn----gtcaatgtggaacatcgtgagaaattgagttggtccaaaatatatgtaccaatattttttaagggaattgctggatatc |
265 |
Q |
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| T |
28747393 |
ttagtaactttttttttttttgtcaatgtggaacatcgtgagaaattgagttggtccaaaatatatgtaccaatattttttaagggaattgctggatatg |
28747492 |
T |
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| Q |
266 |
gcgcgagattatgatgcgaaaatttcaccaccgtatataggccaattatcattcttaaatgatacacacaacgcgactttccttattttccggtctggat |
365 |
Q |
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| T |
28747493 |
gtgagagattatgatgcaaaaatttcaccaccgtatataggccaattatcattcttaaatgatacacacaacgcgactttccttattttccgatttggat |
28747592 |
T |
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| Q |
366 |
gaaattgagttggtaataaacctttacggtagcagtttgggataaagtgtatcgggacaaatagcaatgctcattttactctattcatttgactatgaat |
465 |
Q |
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| T |
28747593 |
gaaattgagttggttataaacctttacatgagcagtttgggataaagtgtatcggcacaaatagcaatgttcattttactctattcatttgactatgaat |
28747692 |
T |
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| Q |
466 |
tattgaattgatgagatcaatgtttatatgactacaaa--tttgaatctgttacctatg |
522 |
Q |
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| T |
28747693 |
tattgaattgatgggattaatgtttatatgactacaaatttttgaatgtgttacctatg |
28747751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 28765182 - 28765340
Alignment:
| Q |
17 |
agtttttctgtttcgaatttatctgcttcttcagaactctttctcacatcaaactgcagaaaactattggttggttaatggttaaagctctatttaacta |
116 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||| |||||| |
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| T |
28765182 |
agtttctctgtttcgaatttctctgcttcttcagaactctttctcacatcaaactgcagaaaactattagttggttaatggctaaag--ctatataacta |
28765279 |
T |
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| Q |
117 |
ctatttggaacaaaattatgaaataacttgctcaataattgaaatttaatttgttagtaac |
177 |
Q |
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| T |
28765280 |
ctatttggaacaaaattatgaaataacttgctcaatagttgaaatttaatttgatagtaac |
28765340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 28772687 - 28772831
Alignment:
| Q |
17 |
agtttttctgtttcgaatttatctgcttcttcagaactctttctcacatcaaactgcagaaaactattggttggtt-aatggttaaagctctatttaact |
115 |
Q |
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| T |
28772687 |
agtttctctttttctaatttctcggtttcttcagcattcttttttacatcaaactgcagaaaactagtagttagttaaatgaataaagctcta--taagt |
28772784 |
T |
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| Q |
116 |
actatttggaacaaaattatgaaataacttgctcaataattgaaatt |
162 |
Q |
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| T |
28772785 |
actatttgaaacaaaactaagaaataacttgtccaatagttgaaatt |
28772831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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