View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13582_low_3 (Length: 470)
Name: NF13582_low_3
Description: NF13582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13582_low_3 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 23 - 458
Target Start/End: Original strand, 12687 - 13122
Alignment:
| Q |
23 |
atctttcttttctgaagatgttgctaaggttggtaagaggattgttaggctatagggacacttcctttggggagggtccaggggaagtaagatatatatt |
122 |
Q |
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| T |
12687 |
atctttcttttctgaagatgttgctaaggttggtaagaggattgttaggctatagggacacttcctttggggagggtccaggggaagtaagatatatatt |
12786 |
T |
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| Q |
123 |
gggtccgttgggcagatgtgtggatgcctaagggaagtcttcagataagagaccataggatggtgaatcaagctatgatgggaatgttcggcggagactc |
222 |
Q |
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| T |
12787 |
gggtccgctgggcagatgtgtggatgcctaagggaagtcttcagataagagaccataggatggtgaatcaagctatgatgggaatgttcggcggagactc |
12886 |
T |
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| Q |
223 |
cctactagaggaatatttatttcaagagatattatctctactaggtatgatgttaattatgtattgtccaccatgggagggagatgtggtagtttgtcta |
322 |
Q |
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| T |
12887 |
cttactagaggaatatttctttcaagagatattatctctactaggtatgatgttaattatgtattgtccaccatgggagggagatgtggtagtttgtcta |
12986 |
T |
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| Q |
323 |
ctgcatttccaggatggaatgatgtctctcttgtaggagttggggttgatgctagtgttgattggttcttagatggagtggttaagattttgtgggatgg |
422 |
Q |
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| T |
12987 |
ctgcatttccaggatggaatgatgtctctcttgtaggagttggggttgatgctagtgttgattggttcttagatggagtggttaagattttgtgggatgg |
13086 |
T |
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| Q |
423 |
gtgactaacttctttataggacaaggcttgtgtctg |
458 |
Q |
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| T |
13087 |
gtgactaacttctttatgggacaaggcttgtgtctg |
13122 |
T |
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