View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13582_low_4 (Length: 407)

Name: NF13582_low_4
Description: NF13582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13582_low_4
NF13582_low_4
[»] chr1 (10 HSPs)
chr1 (156-387)||(15373957-15374189)
chr1 (149-376)||(46358439-46358664)
chr1 (156-314)||(4530800-4530957)
chr1 (155-256)||(15374646-15374746)
chr1 (9-50)||(46358665-46358706)
chr1 (164-256)||(46357885-46357976)
chr1 (155-257)||(45597623-45597725)
chr1 (155-205)||(51610220-51610270)
chr1 (156-196)||(3788435-3788475)
chr1 (155-199)||(4626345-4626389)
[»] chr3 (9 HSPs)
chr3 (157-387)||(51492274-51492504)
chr3 (155-387)||(42146799-42147030)
chr3 (189-307)||(44385128-44385245)
chr3 (156-256)||(42147497-42147596)
chr3 (156-255)||(51491709-51491807)
chr3 (155-204)||(46580363-46580412)
chr3 (156-257)||(53714487-53714588)
chr3 (267-322)||(33968290-33968346)
chr3 (156-196)||(50306531-50306571)
[»] chr7 (8 HSPs)
chr7 (156-387)||(9379612-9379843)
chr7 (155-307)||(37693458-37693609)
chr7 (155-290)||(36661684-36661819)
chr7 (155-210)||(9378728-9378783)
chr7 (164-322)||(34996885-34997045)
chr7 (266-328)||(23624384-23624447)
chr7 (222-281)||(30915799-30915858)
chr7 (222-270)||(30402788-30402836)
[»] scaffold0016 (2 HSPs)
scaffold0016 (170-387)||(67807-68024)
scaffold0016 (156-256)||(67247-67346)
[»] chr8 (3 HSPs)
chr8 (9-150)||(44458876-44459023)
chr8 (9-150)||(44466409-44466556)
chr8 (156-314)||(511334-511491)
[»] chr2 (3 HSPs)
chr2 (156-314)||(6198795-6198951)
chr2 (156-271)||(5504344-5504458)
chr2 (156-196)||(26021919-26021959)
[»] chr6 (1 HSPs)
chr6 (259-329)||(25371271-25371342)
[»] chr4 (7 HSPs)
chr4 (155-281)||(5825333-5825457)
chr4 (221-281)||(20350402-20350462)
chr4 (155-206)||(55879793-55879844)
chr4 (155-209)||(49708720-49708774)
chr4 (266-322)||(38321177-38321233)
chr4 (230-274)||(6680273-6680317)
chr4 (266-329)||(34155500-34155564)
[»] chr5 (1 HSPs)
chr5 (156-196)||(30002864-30002904)


Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 156 - 387
Target Start/End: Original strand, 15373957 - 15374189
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatgg-aaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  15373957 ggtggcatttagggtgggatggggaaagattttcccaccatgggaaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 15374056  T
Q  255 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 354  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15374057 tcaccactagattttttcacactatctcccacatccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 15374156  T
Q  355 ttcccaactctttcaatctctcatcaacttcat 387  Q
    |||||||||||||||||||||||||||||||||    
T  15374157 ttcccaactctttcaatctctcatcaacttcat 15374189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 149 - 376
Target Start/End: Complemental strand, 46358664 - 46358439
Alignment:
Q  149 ctacggaggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcat 248  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  46358664 ctacggaggtggcatttagggtgggatgggaaaagattttcccaccatgggaaagttgatttctaatcctttaatcaaatgaagagcatagttttatcat 46358565  T
Q  249 agtctctcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 348  Q
    ||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46358564 agtctctcaccactaaattttttcacactatctcccacacccttt--tctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtg 46358467  T
Q  349 tccaaattcccaactctttcaatctctc 376  Q
    ||||||||||||||||||||||||||||    
T  46358466 tccaaattcccaactctttcaatctctc 46358439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 4530957 - 4530800
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| |||| |||||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  256 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 314  Q
    |||||||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||    
T  4530857 caccactagatttttttcacactatatcccacaccc--ttctctcctccatcccaactca 4530800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 15374746 - 15374646
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    |||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | |||||||||||||||    
T  15374746 aggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctc 15374648  T
Q  255 tc 256  Q
    ||    
T  15374647 tc 15374646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 50
Target Start/End: Complemental strand, 46358706 - 46358665
Alignment:
Q  9 ctgccatgtcttgcaaacgccatcataaagtggtgagtgaga 50  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  46358706 ctgccatgtcttgcaaacgccatcataaagtggtgagtgaga 46358665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 46357885 - 46357976
Alignment:
Q  164 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 256  Q
    ||||||||||| ||||||||||||| |||||||||  |||||||||| || || ||| || |||| |||| || | |||||||||||||||||    
T  46357885 ttagggtgggaaggggaaatatttttccaccatgggcaagttgattt-tagtcattggattaaataaagaacacacttttatcatagtctctc 46357976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 257
Target Start/End: Original strand, 45597623 - 45597725
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    |||||||||||||||||||   |||||| | ||||||||||| | |||| |  ||| ||||  ||| ||||||  |||| |||||| |||||||||||||    
T  45597623 aggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctc 45597722  T
Q  255 tca 257  Q
    |||    
T  45597723 tca 45597725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Complemental strand, 51610270 - 51610220
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagtt 205  Q
    |||||||||||||||||||  || | |||||||||||||||||| ||||||    
T  51610270 aggtggcatttagggtgggtaggaggaatattttcccaccatgggaaagtt 51610220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 3788435 - 3788475
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccat 196  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  3788435 ggtggcatttagggtgggaaggggaaagagtttcccaccat 3788475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 155 - 199
Target Start/End: Complemental strand, 4626389 - 4626345
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatgga 199  Q
    ||||||||||||||||||||  |||||| | ||||||||||||||    
T  4626389 aggtggcatttagggtgggagagggaaaaaatttcccaccatgga 4626345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 157 - 387
Target Start/End: Complemental strand, 51492504 - 51492274
Alignment:
Q  157 gtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctc 256  Q
    ||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  257 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51492404 accactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaatt 51492305  T
Q  357 cccaactctttcaatctctcatcaacttcat 387  Q
    |||||||||||||||||||||||||||||||    
T  51492304 cccaactctttcaatctctcatcaacttcat 51492274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 155 - 387
Target Start/End: Original strand, 42146799 - 42147030
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  42146799 aggtggcatttagggtgggatggg-aaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctc 42146897  T
Q  255 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146898 tcaccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaa 42146997  T
Q  355 ttcccaactctttcaatctctcatcaacttcat 387  Q
    |||||||||||||||||||||||||||||||||    
T  42146998 ttcccaactctttcaatctctcatcaacttcat 42147030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 307
Target Start/End: Complemental strand, 44385245 - 44385128
Alignment:
Q  189 cccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatt-ttttcacactatctcccaca 287  Q
    ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||||||||||||||| |||||||||||| |||||||    
T  44385245 cccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctcaccactagatttttttcacactatatcccaca 44385146  T
Q  288 cccttttctctcctccatcc 307  Q
    |||  |||||||||||||||    
T  44385145 ccc--ttctctcctccatcc 44385128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 42147596 - 42147497
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  42147596 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 42147498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 255
Target Start/End: Original strand, 51491709 - 51491807
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||| ||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  51491709 ggtggtatttagggtgggaaggggaaagatttttccaccatggacaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 51491807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 204
Target Start/End: Original strand, 46580363 - 46580412
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagt 204  Q
    |||||||||||||||||||  || |||| ||||||| |||||||||||||    
T  46580363 aggtggcatttagggtgggtaggagaaagattttcctaccatggaaaagt 46580412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 257
Target Start/End: Original strand, 53714487 - 53714588
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||   |||||| | ||||||||||||| |||| |  ||| |||   ||| ||||||  |||| |||||| ||||||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 53714586  T
Q  256 ca 257  Q
    ||    
T  53714587 ca 53714588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 33968290 - 33968346
Alignment:
Q  267 tttttcacactatctcccac-acccttttctctcctccatccccactcacccaccac 322  Q
    |||||||||||||||| ||| | | || |||||| ||||||||||||||||||||||    
T  33968290 tttttcacactatctctcaccatcattctctctcttccatccccactcacccaccac 33968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 50306571 - 50306531
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccat 196  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  50306571 ggtggcatttagggtgggaaggggaaagagtttcccaccat 50306531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 156 - 387
Target Start/End: Complemental strand, 9379843 - 9379612
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9379843 ggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctct 9379744  T
Q  256 caccactagattttttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaat 355  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  9379743 caccactagattttttcacactatctcccacaccattttctctcctccatccccactcacccaccacgagcaaaccacaaccaagtccatgcgtccaaat 9379644  T
Q  356 tcccaactctttcaatctctcatcaacttcat 387  Q
    ||||||||||||||||||||||||||||||||    
T  9379643 tcccaactctttcaatctctcatcaacttcat 9379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 155 - 307
Target Start/End: Complemental strand, 37693609 - 37693458
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    |||||| ||||||||||||   |||||| | || ||||| |||| ||||||||||| |||  |||  |||||||||||| ||||||||||| |||| |||    
T  37693609 aggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactc 37693510  T
Q  255 tcaccactagatt-ttttcacactatctcccacacccttttctctcctccatcc 307  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||||||||    
T  37693509 tcaccactagatttttttcacactatatcccacaccc--ttctctcctccatcc 37693458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 290
Target Start/End: Original strand, 36661684 - 36661819
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    |||||||||||||||||||   |||||| | ||||||||||||| |||||   ||| | | | ||  ||||| ||||||||||| |||||| |||| |||    
T  36661684 aggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagtatttttgtgaccattagatcaattgaagagcataattttattatagactc 36661783  T
Q  255 tcaccactagattttttcacactatctcccacaccc 290  Q
    |||||| |||||||||||||||||||| ||||||||    
T  36661784 tcaccattagattttttcacactatcttccacaccc 36661819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 9378728 - 9378783
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgattt 210  Q
    |||||||||||||||||||| ||||||| ||||| ||||||||| |||||||||||    
T  9378728 aggtggcatttagggtgggaaggggaaagatttttccaccatgggaaagttgattt 9378783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 34996885 - 34997045
Alignment:
Q  164 ttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccacta 263  Q
    |||||||||||  | |||| | |||||||| |||| ||||| ||||| | ||| ||  || ||||||| | |||| |||||| |||| || ||| |||||    
T  34996885 ttagggtgggaatgagaaagagtttcccactatgggaaagt-gatttttgatcattagattaaatgaataacataattttataatagactttcaacacta 34996983  T
Q  264 gatttt---ttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 322  Q
    ||||||   |||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  34996984 gatttttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 34997045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 266 - 328
Target Start/End: Complemental strand, 23624447 - 23624384
Alignment:
Q  266 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaa 328  Q
    ||||||||||||||||| ||| ||| || |||||| |||||||||| ||||||||||| |||||    
T  23624447 ttttttcacactatctctcaccaccattctctctcttccatccccattcacccaccacaagcaa 23624384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 222 - 281
Target Start/End: Original strand, 30915799 - 30915858
Alignment:
Q  222 atcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 281  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  30915799 atcaaatgaagaccatacttttatcatactctctcaacactatatttttccccactatct 30915858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 30402836 - 30402788
Alignment:
Q  222 atcaaatgaagagcatagttttatcatagtctctcaccactagattttt 270  Q
    |||||||||||| |||| |||||||||| ||||||| ||||| ||||||    
T  30402836 atcaaatgaagaccatacttttatcatactctctcaacactatattttt 30402788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 170 - 387
Target Start/End: Complemental strand, 68024 - 67807
Alignment:
Q  170 tgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 269  Q
    ||||||||||||| ||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  68024 tgggatggggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctcaccactagatttt 67925  T
Q  270 ttcacactatctcccacacccttttctctcctccatccccactcacccaccacgagcaaaccaccaccaagtccatgtgtccaaattcccaactctttca 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  67924 ttcacactatctcccacatccttttctctcctccatccccactcacccaccacgaacaaaccaccaccaagtccatgtgtccaaattcccaactctttca 67825  T
Q  370 atctctcatcaacttcat 387  Q
    ||||||||||||||||||    
T  67824 atctctcatcaacttcat 67807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 156 - 256
Target Start/End: Original strand, 67247 - 67346
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||| ||||||| |||||||||||||||  |||||||||| ||  | ||| || |||| |||| || | ||||||||||||||||    
T  67247 ggtggcatttagggtgggaaggggaaagattttcccaccatgggcaagttgattt-tagccattggattaaataaagaacacacttttatcatagtctct 67345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 44459023 - 44458876
Alignment:
Q  9 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggtattgtttttgtttgatgtttggcttt--- 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  44459023 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggttttgtttttgtttgatgtttggctttcac 44458924  T
Q  106 ---cacagttacactatcaccactttagtagtacttgatcagttcgct 150  Q
       |||||||||||||||||||||||||||||||||||||||||||||    
T  44458923 attcacagttacactatcaccactttagtagtacttgatcagttcgct 44458876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 44466556 - 44466409
Alignment:
Q  9 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggtattgtttttgtttgatgtttggcttt--- 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       
T  44466556 ctgccatgtcttgcaaacgccatcataaagtggtgagtgagagagaatcgaatggggacaagcggctaggttttgtttttgtttgatgtttggctttcac 44466457  T
Q  106 ---cacagttacactatcaccactttagtagtacttgatcagttcgct 150  Q
       |||||||||||||||||||||||||||||||||||||||||||||    
T  44466456 attcacagttacactatcaccactttagtagtacttgatcagttcgct 44466409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 511491 - 511334
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||    ||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||||||||||||| |||||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  256 caccactagatt-ttttcacactatctcccacacccttttctctcctccatccccactca 314  Q
    |||||||||||| |||||||||||||||||||||||  |||||||||||||||| |||||    
T  511391 caccactagatttttttcacactatctcccacaccc--ttctctcctccatcccaactca 511334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 156 - 314
Target Start/End: Complemental strand, 6198951 - 6198795
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||   |||||| | ||||||| ||| | ||||||||||| ||| | ||| ||||||| ||||||||| |||||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  256 caccactagattttttcacactatctcccacacccttttctctcctccatccccactca 314  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||| |||||    
T  6198851 caccactagatttttttacactatctcccacaccc--ttctctcctccatcccaactca 6198795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 156 - 271
Target Start/End: Original strand, 5504344 - 5504458
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctct 255  Q
    ||||||||||||||||||| ||||||| | |||||||| || |||||| |||||| | | | ||  |||||||||| | |||| |||||| ||||  | |    
T  5504344 ggtggcatttagggtgggaaggggaaagagtttcccactatagaaaag-tgatttttgaccattagatcaaatgaataacataattttataatagatttt 5504442  T
Q  256 caccactagatttttt 271  Q
    || |||||||||||||    
T  5504443 caacactagatttttt 5504458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 156 - 196
Target Start/End: Complemental strand, 26021959 - 26021919
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccat 196  Q
    ||||||||||||||||||| ||||||| | |||||||||||    
T  26021959 ggtggcatttagggtgggaaggggaaagagtttcccaccat 26021919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 329
Target Start/End: Original strand, 25371271 - 25371342
Alignment:
Q  259 cactagattttttcacactatctccca-cacccttttctctcctccatccccactcacccaccacgagcaaa 329  Q
    |||||||||||||||||||||||| || || | || |||||| |||||||| ||||||||||||| ||||||    
T  25371271 cactagattttttcacactatctctcaccatcattctctctcttccatccctactcacccaccacaagcaaa 25371342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 281
Target Start/End: Original strand, 5825333 - 5825457
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatttctaatccttgaatcaaatgaagagcatagttttatcatagtctc 254  Q
    ||||||||||||||||||||  |||||| | ||||||||||| | ||||||  ||||||| | ||  ||||||||| || || | | ||||| || ||||    
T  5825333 aggtggcatttagggtgggaatgggaaagagtttcccaccatagcaaagtt-ttttctaaccattagatcaaatgaggaacacattattatcctactctc 5825431  T
Q  255 tcaccactagattttttcacactatct 281  Q
    ||| ||||||||||||| |||||||||    
T  5825432 tcaacactagatttttt-acactatct 5825457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 20350402 - 20350462
Alignment:
Q  221 aatcaaatgaagagcatagttttatcatagtctctcaccactagattttttcacactatct 281  Q
    ||||||||||||| |||| |||||||||| ||||||| ||||| |||||| | ||||||||    
T  20350402 aatcaaatgaagatcatacttttatcatactctctcaacactatatttttccccactatct 20350462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 55879793 - 55879844
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttg 206  Q
    |||||||||||||||||||   |||||||| ||||||||||||| |||||||    
T  55879793 aggtggcatttagggtgggtgagggaaataatttcccaccatgggaaagttg 55879844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Complemental strand, 49708774 - 49708720
Alignment:
Q  155 aggtggcatttagggtgggatggggaaatattttcccaccatggaaaagttgatt 209  Q
    |||||||||||||||||||   |||||| | ||||||||||||||||||| ||||    
T  49708774 aggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaagtagatt 49708720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 38321233 - 38321177
Alignment:
Q  266 ttttttcacactatctccca-cacccttttctctcctccatccccactcacccaccac 322  Q
    |||||||||||||||||||| |||| || |||||||||||||||| |||||| |||||    
T  38321233 ttttttcacactatctcccaccaccattctctctcctccatcccc-ctcacctaccac 38321177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 6680317 - 6680273
Alignment:
Q  230 aagagcatagttttatcatagtctctcaccactagattttttcac 274  Q
    |||| ||||||||||||||||  ||||| ||||||||||||||||    
T  6680317 aagaacatagttttatcatagattctcaacactagattttttcac 6680273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 329
Target Start/End: Complemental strand, 34155564 - 34155500
Alignment:
Q  266 ttttttcacactatctcccac-acccttttctctcctccatccccactcacccaccacgagcaaa 329  Q
    ||||||||||||||||| ||| | | || |||||| |||| ||||||||||||||||| ||||||    
T  34155564 ttttttcacactatctctcaccatcattctctctcttccacccccactcacccaccacaagcaaa 34155500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 30002864 - 30002904
Alignment:
Q  156 ggtggcatttagggtgggatggggaaatattttcccaccat 196  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  30002864 ggtggcatttagggtgggaaggggaaagattttcccaccat 30002904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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