View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13583_high_11 (Length: 365)
Name: NF13583_high_11
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_high_11 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 30414707 - 30415054
Alignment:
| Q |
1 |
aacccacacggttctgaacatcgagcgtgaaccacaagacgaggagaacaccgggaaacgaacattgcttagccggttgaaagacatacaccaagcccca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30414707 |
aacccacacagttctgaacatcgagcgtgaaccacaagacgaggagaacaccgggaaacgaacattgcttagccggttgaaagacatacaccaagcccca |
30414806 |
T |
|
| Q |
101 |
ctcgcactacacataagacaaaatgcgacaacagccaagacacatcagaacacacaaaaagccacacgcgacagacccaaaacaacacctccgcaccacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
30414807 |
ctcgcactacacataagacaaaatgcgacaacagccaagacacattagaacacacacaaagccacacgcgacagacctaaaataacacctccgcaccacc |
30414906 |
T |
|
| Q |
201 |
gcaatactaaacgaaccaacacaaaaacaccaccagacccaaacatacgagcagaccctaatcctaattagttgaaaactaaaaacatatttaaacaaaa |
300 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30414907 |
gcaatactacatgaaccaacacaaaaacaccaccagacccgaacatgcgagcagaccttaatcctaattagttgaaaactaaaaacataattaaacaaaa |
30415006 |
T |
|
| Q |
301 |
taaatgtgtcaccatttttaattttagtgatagcatgcacattatttt |
348 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30415007 |
taaatgtgtcaccatttttaattttagtgatagcatgtacattatttt |
30415054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University