View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_high_13 (Length: 331)
Name: NF13583_high_13
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_high_13 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 38843272 - 38842964
Alignment:
| Q |
19 |
aatatgcttctgagtttaacaaacgaggagttatgctgttaggtatgtcttgtgatgatcttgaatctcacaaggagtggatcaaagacattgaagcaca |
118 |
Q |
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| T |
38843272 |
aatatgcttctgagtttaacaaacgaggagttatgctgttaggtatgtcttgtgatgatcttgaatctcacaaggagtggatcaaagacattgaagcaca |
38843173 |
T |
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| Q |
119 |
taccgtaagttttcctattttccacatgcatgcacaccaaaattttcatattcttgtttgttcatatgtttgtaattgtaaatgcagccaggtgcaaagg |
218 |
Q |
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| T |
38843172 |
tactgtaagttttcctattttccacatgcatgcacaccaaaattttcatattcttgttg----atatttttgtaattgtaaatgcagccaggtgcaaagg |
38843077 |
T |
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| Q |
219 |
tgaactatccaataatttctgatcctaaaagagaaatcatcaagcaactcaacatggttgatcctgatgagaaagattcaaatggaaatttaccatcaag |
318 |
Q |
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| T |
38843076 |
ttaactatccaataatttctgatcctaaaagagaaatcatcaagcaactcaacatggttgatcctgatgagaaagattcaaatggaaatttaccatcaag |
38842977 |
T |
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| Q |
319 |
ggctcttcatatt |
331 |
Q |
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| T |
38842976 |
ggctcttcatatt |
38842964 |
T |
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