View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13583_high_15 (Length: 290)

Name: NF13583_high_15
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13583_high_15
NF13583_high_15
[»] chr4 (3 HSPs)
chr4 (1-289)||(2895955-2896243)
chr4 (67-287)||(2888126-2888346)
chr4 (90-257)||(2878654-2878821)
[»] chr2 (3 HSPs)
chr2 (112-289)||(44209806-44209983)
chr2 (112-289)||(44232827-44233004)
chr2 (112-289)||(44222001-44222178)
[»] chr7 (10 HSPs)
chr7 (184-242)||(1083597-1083655)
chr7 (184-242)||(39563083-39563141)
chr7 (183-236)||(39573621-39573674)
chr7 (176-225)||(39620948-39620997)
chr7 (184-226)||(39339874-39339916)
chr7 (184-226)||(39354695-39354737)
chr7 (184-226)||(39546290-39546332)
chr7 (184-226)||(39536975-39537017)
chr7 (184-221)||(39367301-39367338)
chr7 (187-223)||(39588132-39588168)


Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 2895955 - 2896243
Alignment:
Q  1 tgagatggacatcatcaaaagaagttaacattcaagttggaaagaaaatcggactaactataatatttcttatttttcagataatgaagtttcacttact 100  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2895955 tgagctggaaatcaacaaaagaagttaacattcaagttggaaagaaaatcggactaactataatatttcttatttttcacataatgaagtttcacttact 2896054  T
Q  101 atttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896055 atttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatga 2896154  T
Q  201 ccaatgttgtttccataagcaagccaagcattggatccaaaatgattgtgagtattgtgcggagaaatgaagatccttagaaccaggag 289  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2896155 ccaatgttgtttccataggcaagccaagcattggatccaaaatgattgtgagtattgggcggagaaatgaagatccttagaaccaggag 2896243  T

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Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 67 - 287
Target Start/End: Complemental strand, 2888346 - 2888126
Alignment:
Q  67 ttcttatttttcagataatgaagtttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacc 166  Q
    ||||||||||||||||||||||  ||||||||||||||||||||||| | ||| || |||||||||||||||||  ||||||||  ||||||||||||||    
T  2888346 ttcttatttttcagataatgaaagttcacttactatttccttccaagatcccaaaatattgttccaaacatcaagcctatgaaaacagtgaagaaaaacc 2888247  T
Q  167 tcacagcagtgtatggcggattgcgccagtatgaccaatgttgtttccataagcaagccaagcattggatccaaaatgattgtgagtattgtgcggagaa 266  Q
    |||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||   ||||||||||||||||||| || |||||    
T  2888246 tcacagaagtgtatggcgggttgcgccaatatgaccaatgttgtttccataagcaagccaaacattggactaaaaatgattgtgagtattgggcagagaa 2888147  T
Q  267 atgaagatccttagaaccagg 287  Q
    || |||||| || ||||||||    
T  2888146 ataaagatcatttgaaccagg 2888126  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 90 - 257
Target Start/End: Complemental strand, 2878821 - 2878654
Alignment:
Q  90 tttcacttactatttccttccaaggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattg 189  Q
    ||||||||||||||| | ||| |||| ||| ||||||||||||||||||||||||||||||||||  ||| ||||||| ||||||||||||  ||| |||    
T  2878821 tttcacttactatttgcgtccgaggtcccaaaacattgttccaaacatcaatgctatgaaagtagcaaagtaaaacctaacagcagtgtataacgggttg 2878722  T
Q  190 cgccagtatgaccaatgttgtttccataagcaagccaagcattggatccaaaatgattgtgagtattg 257  Q
    ||||| ||||||||| |||||||||| ||||||||||||||||| |   |||||||||||||||||||    
T  2878721 cgccaatatgaccaacgttgtttccacaagcaagccaagcattgaactaaaaatgattgtgagtattg 2878654  T

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Target: chr2 (Bit Score: 86; Significance: 4e-41; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 289
Target Start/End: Original strand, 44209806 - 44209983
Alignment:
Q  112 aggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatgaccaatgttgtt 211  Q
    |||| |||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  44209806 aggtcccagaacattgttccaaacatcaaggctatgaatgtcgtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44209905  T
Q  212 tccataagcaagccaagcattggatccaaaatgattgtgagtattgtgcggagaaatgaagatccttagaaccaggag 289  Q
    |||||||||| |||  |||||||| | | || || || ||| |||| |  | ||||||||||||||| ||||||||||    
T  44209906 tccataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggag 44209983  T

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Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 112 - 289
Target Start/End: Original strand, 44232827 - 44233004
Alignment:
Q  112 aggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatgaccaatgttgtt 211  Q
    |||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  44232827 aggtcccagaacattgttccaaacatcaagcctatgaatgtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44232926  T
Q  212 tccataagcaagccaagcattggatccaaaatgattgtgagtattgtgcggagaaatgaagatccttagaaccaggag 289  Q
    |||||||||| |||  |||||||| | | || || || ||| |||| |  | ||||||||||||||| ||||||||||    
T  44232927 tccataagcaggcctggcattggaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggag 44233004  T

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Target: chr2; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 112 - 289
Target Start/End: Original strand, 44222001 - 44222178
Alignment:
Q  112 aggttccagaacattgttccaaacatcaatgctatgaaagtagtgaagaaaaacctcacagcagtgtatggcggattgcgccagtatgaccaatgttgtt 211  Q
    |||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||    
T  44222001 aggtcccagaacattgttccaaacatcaagcctatgaaggtagtgaagaaaaacctcacagcagtgtatggtggattacgccaatatgaccaacgttgtt 44222100  T
Q  212 tccataagcaagccaagcattggatccaaaatgattgtgagtattgtgcggagaaatgaagatccttagaaccaggag 289  Q
    |||||||||| |||  |||||| | | | || || || ||| |||| |  | ||||||||||||||| ||||||||||    
T  44222101 tccataagcaggcctggcattgaaccaagaaagactgcgagaattgagtagggaaatgaagatcctttgaaccaggag 44222178  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 1083597 - 1083655
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagccaagcattggatccaaaa 242  Q
    |||||||||||||| |||||||||||||||||||| ||||||| ||||||  |||||||    
T  1083597 ggattgcgccagtaagaccaatgttgtttccataaacaagccatgcattgtgtccaaaa 1083655  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 242
Target Start/End: Original strand, 39563083 - 39563141
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagccaagcattggatccaaaa 242  Q
    ||||||||||| || |||||||||||||||||||||||||||| ||||||  |||||||    
T  39563083 ggattgcgccaataagaccaatgttgtttccataagcaagccatgcattgtgtccaaaa 39563141  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 236
Target Start/End: Original strand, 39573621 - 39573674
Alignment:
Q  183 cggattgcgccagtatgaccaatgttgtttccataagcaagccaagcattggat 236  Q
    ||||||||||||||| |||||||||||||||||||| |||||||  ||||||||    
T  39573621 cggattgcgccagtaagaccaatgttgtttccataaacaagccatacattggat 39573674  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 39620948 - 39620997
Alignment:
Q  176 tgtatggcggattgcgccagtatgaccaatgttgtttccataagcaagcc 225  Q
    ||||| ||||||| |||||||| |||||||||||||||||||||||||||    
T  39620948 tgtatcgcggattccgccagtaagaccaatgttgtttccataagcaagcc 39620997  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 39339916 - 39339874
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagcca 226  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  39339916 ggattgcgccaataagaccaatgttgtttccataagcaagcca 39339874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 39354737 - 39354695
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagcca 226  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  39354737 ggattgcgccaataagaccaatgttgtttccataagcaagcca 39354695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 39546290 - 39546332
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagcca 226  Q
    |||||||||||||| |||||||||||||||||||| |||||||    
T  39546290 ggattgcgccagtaagaccaatgttgtttccataaacaagcca 39546332  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 39536975 - 39537017
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagcaagcca 226  Q
    |||||||||||||| ||||||||||||||||| || |||||||    
T  39536975 ggattgcgccagtaggaccaatgttgtttccacaaacaagcca 39537017  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 39367338 - 39367301
Alignment:
Q  184 ggattgcgccagtatgaccaatgttgtttccataagca 221  Q
    ||||||||||| || |||||||||||||||||||||||    
T  39367338 ggattgcgccaataagaccaatgttgtttccataagca 39367301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 39588132 - 39588168
Alignment:
Q  187 ttgcgccagtatgaccaatgttgtttccataagcaag 223  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  39588132 ttgcgccagtaagaccaatgttgtttccataaacaag 39588168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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