View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_high_7 (Length: 436)
Name: NF13583_high_7
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 418
Target Start/End: Complemental strand, 42626852 - 42626444
Alignment:
| Q |
10 |
aagaatattttgggagatagtatatgattaaatgagaaagagagaaatgaaagaaaaagaacctgagcaacagtctcgccatcagccttctttggtgagg |
109 |
Q |
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| T |
42626852 |
aagaatattttgggagatagtatatgattaaatgagaaagagagaaatgaaagaaaaagaacctgagcaacagtctcgccatcagccttctttggtgagg |
42626753 |
T |
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| Q |
110 |
ttggaacctcaactggagcttccccttcgttcacagcaaaatccttaggagtactcacacaacctcccatgattcaatttagattgttaaacaaagagag |
209 |
Q |
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| T |
42626752 |
ttggaacctcaactggggcttccccttcgttcacagcaaaatccttaggagtactcacacaacctcccatgattcaatttagattgttaaacaaagagag |
42626653 |
T |
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| Q |
210 |
tgaaagggaggtgtgtggtttaattaagggcaaaaataaagggtaaaatatatatagctgcattgtatttgtggtttaaattttaggaacaattttcggg |
309 |
Q |
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| T |
42626652 |
tgaaagggaggtgtgtggtttaattaagggcaaaaataaagggtaaaatatatatagctgcattgtatttgtggtttaaattttaggaacaattttcggg |
42626553 |
T |
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| Q |
310 |
ttgtaatagaaagaaattagcctggcaaagaggatgttttgtggccaaaataaacccgattcttacgtatgtatagatggtcgttaaattcattataaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42626552 |
ttgtaatagaaagaaattagcctggcaaagaggatgttttgtggccaaaataaacccgattcttacgtatgtatagatggtcgttaaattcattataaca |
42626453 |
T |
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| Q |
410 |
acaattgac |
418 |
Q |
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| T |
42626452 |
acaattgac |
42626444 |
T |
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