View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13583_high_8 (Length: 418)

Name: NF13583_high_8
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13583_high_8
NF13583_high_8
[»] chr1 (8 HSPs)
chr1 (11-400)||(45550156-45550545)
chr1 (197-350)||(45545035-45545188)
chr1 (204-357)||(45544125-45544281)
chr1 (198-333)||(45548928-45549063)
chr1 (231-357)||(45549819-45549948)
chr1 (61-128)||(45544343-45544410)
chr1 (355-398)||(45549637-45549680)
chr1 (357-400)||(45550866-45550909)
[»] chr4 (1 HSPs)
chr4 (11-128)||(36615875-36615992)
[»] chr5 (3 HSPs)
chr5 (45-151)||(19670886-19670993)
chr5 (187-252)||(19691998-19692064)
chr5 (270-322)||(19671100-19671152)


Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 400
Target Start/End: Complemental strand, 45550545 - 45550156
Alignment:
Q  11 atatataccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttaca 110  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45550545 atatataccttagaaacttaggtatgatcggttaagttttgttaaaaatagattcaatgaaaacaatacaagacaatagagacgttcatttttatttaca 45550446  T
Q  111 ttgagattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgaccctaacaatttgttttccattgagttaatactttcatg 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  45550445 ttgagattcaataaatttcttggattaggataaaatgtgaattttactctttctccagtgacactaacaatttgttttccattgagttaatactttcatg 45550346  T
Q  211 tgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacaga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550345 tgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaaaacctaccacaga 45550246  T
Q  311 accaaaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatcc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45550245 accaaaaatccagtcatctgttgtcgacattgaataccctcctgctgaggcatatactcttcccaattatcaaatcaaagacactgatcc 45550156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 197 - 350
Target Start/End: Complemental strand, 45545188 - 45545035
Alignment:
Q  197 ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtca 296  Q
    ||||||||||||| || |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||    
T  45545188 ttaatactttcatttgcgttggcttacaggaagtgatgaaataaaagacataacaccactcgaggaatctcttgagagaatgaatgtgcatgacgagtca 45545089  T
Q  297 aaacctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccct 350  Q
    ||||||||||||||||||||||||||||||| |||||  |||| ||||||||||    
T  45545088 aaacctaccacagaaccaaaaatccagtcatatgttgctgacactgaataccct 45545035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 204 - 357
Target Start/End: Complemental strand, 45544281 - 45544125
Alignment:
Q  204 tttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagt---caaaac 300  Q
    |||||||||||||||||| |||||||| |||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||     |||| |    
T  45544281 tttcatgtgtgttggcttacagaaagtaatgaaacaaaagacattacaccgcttgaggaatctcttgagagaatgaatgtgcatgatgatgaaccaaatc 45544182  T
Q  301 ctaccacagaaccaaaaatccagtcatctgttgtcgacattgaataccctcctgctg 357  Q
    ||||||| ||| ||||||||||| ||| ||||   ||||||||||||||| ||||||    
T  45544181 ctaccactgaaacaaaaatccagccatttgttactgacattgaatacccttctgctg 45544125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 198 - 333
Target Start/End: Complemental strand, 45549063 - 45548928
Alignment:
Q  198 taatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatgatgagtcaa 297  Q
    ||||| |||||||| |||||| || ||| ||||| |||| ||||||| |  ||| |||| ||||||||||| |||||||||||||||||||||||| |||    
T  45549063 taataatttcatgtatgttggtttacaggaagtggtgaagtaaaagaaacaacagcacttgaggaatctctagagagaatgaatgtgcatgatgagccaa 45548964  T
Q  298 aacctaccacagaaccaaaaatccagtcatctgttg 333  Q
    |||||||||||||||||||||||||| || ||||||    
T  45548963 aacctaccacagaaccaaaaatccagccacctgttg 45548928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 357
Target Start/End: Complemental strand, 45549948 - 45549819
Alignment:
Q  231 gatgaaataaaagacattacaccactcgaggaatctctcgagagaatgaatgtgcatg---atgagtcaaaacctaccacagaaccaaaaatccagtcat 327  Q
    ||||||| ||||||||||| |||||| ||||||||||| |||||||||||||||||||   ||||| |||||||||||||||||| ||| |||||| |||    
T  45549948 gatgaaagaaaagacattaaaccacttgaggaatctcttgagagaatgaatgtgcatgatgatgagccaaaacctaccacagaacgaaatatccagccat 45549849  T
Q  328 ctgttgtcgacattgaataccctcctgctg 357  Q
    |||||   |||| |||||||||||||||||    
T  45549848 ctgttactgacactgaataccctcctgctg 45549819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 45544410 - 45544343
Alignment:
Q  61 gattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaattt 128  Q
    |||||||||||||||||| ||| |||||||  | ||| |||||||||||||||| ||||||| |||||    
T  45544410 gattcaatgaaaataatataagtcaatagactcattcttttttatttacattgatattcaatcaattt 45544343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 45549680 - 45549637
Alignment:
Q  355 ctgaggcatatactcttcccaattatcaaatcaaagacactgat 398  Q
    |||||||||||||||||||||||||||||| ||||||| |||||    
T  45549680 ctgaggcatatactcttcccaattatcaaaccaaagacgctgat 45549637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 400
Target Start/End: Complemental strand, 45550909 - 45550866
Alignment:
Q  357 gaggcatatactcttcccaattatcaaatcaaagacactgatcc 400  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||    
T  45550909 gaggaatatactcttcccaattatcaaaccaaagaaactgatcc 45550866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 36615875 - 36615992
Alignment:
Q  11 atatataccttagaaacttaggtatgattagttaagttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttaca 110  Q
    |||| ||||||||||| ||| |||||| | ||  |||||||||||||||| ||||| |||||||||||||||||||||||  | ||||||||||||| ||    
T  36615875 atatttaccttagaaatttaagtatgaatggtatagttttgttaaaaataaattcagtgaaaataatacaagacaatagactcattcatttttatttgca 36615974  T
Q  111 ttgagattcaataaattt 128  Q
    |||| ||||||| |||||    
T  36615975 ttgacattcaatcaattt 36615992  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 19670886 - 19670993
Alignment:
Q  45 agttttgttaaaaatagattcaatgaaaataatacaagacaatagagacgttcatttttatttacattgagattcaataaatttcttgga-ttaggataa 143  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |  | ||||||||||||| ||||| |||||||| ||||| |||||  || |||||    
T  19670886 agttttgttaaaaatatattcaatgaaaataatacaagacaatatattcattcatttttatttgcattgtgattcaatcaattttttggagataagataa 19670985  T
Q  144 aatgtgaa 151  Q
    ||||||||    
T  19670986 aatgtgaa 19670993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 19691998 - 19692064
Alignment:
Q  187 ttccattgag-ttaatactttcatgtgtgttggcttccagaaagtgatgaaataaaagacattacac 252  Q
    |||||||||| ||||||||||||| ||||||||||   |||||||||| |||||||| |||||||||    
T  19691998 ttccattgagattaatactttcatatgtgttggctcatagaaagtgattaaataaaatacattacac 19692064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 322
Target Start/End: Original strand, 19671100 - 19671152
Alignment:
Q  270 gagagaatgaatgtgcatgatgagtcaaaacctaccacagaaccaaaaatcca 322  Q
    |||| ||||||||||||||||||| | ||||| || |||||||||||||||||    
T  19671100 gagataatgaatgtgcatgatgagcctaaaccaacaacagaaccaaaaatcca 19671152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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