View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13583_low_1 (Length: 629)

Name: NF13583_low_1
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13583_low_1
NF13583_low_1
[»] chr4 (9 HSPs)
chr4 (18-615)||(2896221-2896836)
chr4 (145-313)||(2887838-2888005)
chr4 (372-615)||(2887518-2887757)
chr4 (542-615)||(2877995-2878068)
chr4 (153-294)||(2878334-2878475)
chr4 (373-445)||(2878168-2878240)
chr4 (21-101)||(2888063-2888143)
chr4 (21-80)||(2878582-2878641)
chr4 (548-601)||(51049755-51049808)
[»] chr2 (9 HSPs)
chr2 (148-293)||(44222320-44222465)
chr2 (373-459)||(44233375-44233461)
chr2 (373-459)||(44222555-44222641)
chr2 (378-466)||(44210359-44210447)
chr2 (170-293)||(44210141-44210264)
chr2 (548-615)||(44210552-44210619)
chr2 (548-613)||(44222752-44222817)
chr2 (548-615)||(44233574-44233641)
chr2 (191-293)||(44233183-44233285)
[»] chr7 (16 HSPs)
chr7 (549-613)||(1084415-1084479)
chr7 (211-269)||(39573967-39574025)
chr7 (550-615)||(42141748-42141813)
chr7 (550-615)||(42153550-42153615)
chr7 (230-275)||(39588464-39588509)
chr7 (220-284)||(39367000-39367064)
chr7 (549-613)||(39537613-39537677)
chr7 (549-613)||(39547078-39547142)
chr7 (211-279)||(39563358-39563426)
chr7 (549-615)||(39354020-39354086)
chr7 (230-270)||(1084088-1084128)
chr7 (549-613)||(39339179-39339243)
chr7 (220-284)||(39339556-39339620)
chr7 (220-284)||(39354397-39354461)
chr7 (549-613)||(39366602-39366666)
chr7 (549-613)||(39563709-39563773)
[»] chr1 (3 HSPs)
chr1 (542-604)||(2160216-2160278)
chr1 (226-270)||(2159897-2159941)
chr1 (547-615)||(19543314-19543382)
[»] chr3 (1 HSPs)
chr3 (549-613)||(25522821-25522885)
[»] chr8 (1 HSPs)
chr8 (548-613)||(4501799-4501864)
[»] chr5 (1 HSPs)
chr5 (552-613)||(29777525-29777586)


Alignment Details
Target: chr4 (Bit Score: 524; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 615
Target Start/End: Original strand, 2896221 - 2896836
Alignment:
Q  18 atgaagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcctaaagagtagtttatatcagtgtaagtatatattgtta 117  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  2896221 atgaagatccttagaaccaggagcaggtttgcctaattctactataagttgcttgtttctcctaaagaatagtttatatcagtgtaagtatatattgtta 2896320  T
Q  118 caataatattatttatactata-gctcttaaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttg 216  Q
    ||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896321 caatattattatttatactataagttcttaaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttg 2896420  T
Q  217 tgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattagcat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896421 tgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattagcat 2896520  T
Q  317 attagctaccaacaagaattattgtt-----------------agactaaaaacaatattgaatgcacttttcatccaacctcaaaatacttgatcaatt 399  Q
    |||||||||||||||||||||| |||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896521 attagctaccaacaagaattatggttatcaactttaatatttcagactaaaaacaatattgaatgcacttttcatccaacctcaaaatacttgatcaatt 2896620  T
Q  400 gattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattaggagtaactaaaagaaatcatttatattaggtcagttcaagta 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2896621 gattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattaggagtaactaaaagaaatcatttatattaggtcagttcaagta 2896720  T
Q  500 cagaaaaggaagaatcataaaacatgattttttatcaaaatcatttcttacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaa 599  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2896721 cagaaaaggaagaatcataaaacatgattttttatcaaaatcatttcttacctcatcaaaagcttcgaatatgtcaatacttggttgatgaatggtgcaa 2896820  T
Q  600 acaactgttcttcctg 615  Q
    ||||||||||||||||    
T  2896821 acaactgttcttcctg 2896836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 145 - 313
Target Start/End: Complemental strand, 2888005 - 2887838
Alignment:
Q  145 taaattagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaa 244  Q
    |||||| ||||||||||||||||||||||||||||||  || |||||||||||  |||| |||| |||||||||||||||| | ||||||||||||||||    
T  2888005 taaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctagagtaagttcttgtgctgaactcgaaacttccaacatccaa 2887906  T
Q  245 gttgctggattatagccatctttaattttactaaccccttcgatgctctaaaacaacagaaaatattag 313  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  2887905 gttgctggattatagccatctttgattttactaaccccttcaatgctct-aaacaacagaaaatattag 2887838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 372 - 615
Target Start/End: Complemental strand, 2887757 - 2887518
Alignment:
Q  372 catccaacctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattaggagtaactaaaaga 471  Q
    |||||||||||||||||||||||||||||| | |||||||||||||  || ||||||||| |||||| ||||||||| ||||| |||| |||||  || |    
T  2887757 catccaacctcaaaatacttgatcaattgactagaatgacgacccagcggtccaacatatatttcttctcctccgcgtttcatgaggaataactggaata 2887658  T
Q  472 aatcatttatattaggtcagttcaagtacagaaaaggaagaatcataaaacatgattttttatcaa--aatcatttcttacctcatcaaaagcttcgaat 569  Q
     || || ||| |||      ||| ||| || || ||||||||  | |||||   |||||||| |||  ||||||||||||||||||||||||||||||||    
T  2887657 tataatgtatgttat-----ttcgagtccaaaagaggaagaaaaagaaaacgc-attttttaccaacaaatcatttcttacctcatcaaaagcttcgaat 2887564  T
Q  570 atgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  2887563 atgtcaatacttggttgatgaatggtgcaaacaactgttcttcctg 2887518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 542 - 615
Target Start/End: Complemental strand, 2878068 - 2877995
Alignment:
Q  542 atttcttacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||||||||||||||||    
T  2878068 atttcttacctcatcaaaagattcaaatatgtcgatacttggttgatgaatggtacaaacaactgttcttcctg 2877995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 153 - 294
Target Start/End: Complemental strand, 2878475 - 2878334
Alignment:
Q  153 cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctgg 252  Q
    ||||||| || | |||||||||||||||||| |||||||||||| ||||||| | |  ||||||||||| ||| || ||||| |||||||| ||||||||    
T  2878475 cttacctatatagctcagaatttttgtatatctcatgaaaatcagcacctaatgcaacttcttgtgctggactcgtcacttctaacatccatgttgctgg 2878376  T
Q  253 attatagccatctttaattttactaaccccttcgatgctcta 294  Q
     ||||| ||||| || |||||||| || ||||| || |||||    
T  2878375 gttatatccatcgtttattttacttactccttcaatactcta 2878334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 445
Target Start/End: Complemental strand, 2878240 - 2878168
Alignment:
Q  373 atccaacctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacatatgtttcttgtcctcc 445  Q
    ||||||||||||| ||||||||||||||||| |||| |||||| ||||||||| ||||| ||||| |||||||    
T  2878240 atccaacctcaaagtacttgatcaattgattagaataacgacctaatggcccagcatatatttctcgtcctcc 2878168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 2888143 - 2888063
Alignment:
Q  21 aagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcctaaagagtagtttatatcagtg 101  Q
    |||||| || |||||||| | ||||||||| |||||| |||||||||||||||||||||| || | ||||||||| |||||    
T  2888143 aagatcatttgaaccaggtgcaggtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtg 2888063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 2878641 - 2878582
Alignment:
Q  21 aagatccttagaaccaggagtaggtttgcccaattctactataagttgcttgtttctcct 80  Q
    ||||||||| |||||| ||| |||||| ||||||||| ||||||||||||| ||||||||    
T  2878641 aagatccttggaaccaagagcaggttttcccaattcttctataagttgcttatttctcct 2878582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 601
Target Start/End: Complemental strand, 51049808 - 51049755
Alignment:
Q  548 tacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaac 601  Q
    ||||||||||||||  || ||||| || |||||||||||||| |||||||||||    
T  51049808 tacctcatcaaaagtctcaaatatatcgatacttggttgatgtatggtgcaaac 51049755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 44222320 - 44222465
Alignment:
Q  148 attagcttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagtt 247  Q
    ||||| |||||| || || || ||||||||||| | |||   ||| |||||||| ||| || |||||||||||| | ||||||||||||||||||| |||    
T  44222320 attagtttacctatataaatctgaatttttgtacaaatcggtaaagtcaacacccaaattaagttcttgtgctgtagttgtaacttccaacatccatgtt 44222419  T
Q  248 gctggattatagccatctttaattttactaaccccttcgatgctct 293  Q
    ||||| ||||| |||||||| ||||||||||| || || |||||||    
T  44222420 gctgggttatatccatctttgattttactaactccgtcaatgctct 44222465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 44233375 - 44233461
Alignment:
Q  373 atccaacctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattagga 459  Q
    |||| |||||||||||||||||||| ||| | ||||||||||||||||| ||||||||| ||||||||||||| || ||||| ||||    
T  44233375 atcctacctcaaaatacttgatcaaatgagtagaatgacgacccaatggtccaacatatatttcttgtcctccacgtttcataagga 44233461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 373 - 459
Target Start/End: Original strand, 44222555 - 44222641
Alignment:
Q  373 atccaacctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattagga 459  Q
    |||| ||||| |||||||||||||| ||| | ||||||||||||| ||| ||||||||| ||||||||||||| |||||||| ||||    
T  44222555 atcctacctcgaaatacttgatcaaatgagtagaatgacgacccagtggtccaacatatatttcttgtcctccacgcttcataagga 44222641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 378 - 466
Target Start/End: Original strand, 44210359 - 44210447
Alignment:
Q  378 acctcaaaatacttgatcaattgattggaatgacgacccaatggcccaacatatgtttcttgtcctccgcgcttcattaggagtaacta 466  Q
    ||||| |||||||||||||| ||| | ||||||||||||||||| ||||||||| |||| |||||||| || ||||| |||| ||||||    
T  44210359 acctcgaaatacttgatcaaatgagtagaatgacgacccaatggtccaacatatatttcctgtcctccacgtttcataaggaataacta 44210447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 170 - 293
Target Start/End: Original strand, 44210141 - 44210264
Alignment:
Q  170 gaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaa 269  Q
    ||||||||||| | |||   |||||||||||| ||| || |||||||||| | | ||||||||||||||||||| |||||||| ||||| || ||||| |    
T  44210141 gaatttttgtacaaatcggtaaaatcaacacccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttga 44210240  T
Q  270 ttttactaaccccttcgatgctct 293  Q
    ||||||| || || || |||||||    
T  44210241 ttttactcactccgtcaatgctct 44210264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 44210552 - 44210619
Alignment:
Q  548 tacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||| || ||||||||||||||||    
T  44210552 tacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcctg 44210619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 613
Target Start/End: Original strand, 44222752 - 44222817
Alignment:
Q  548 tacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    |||||||||||| ||||| ||||||||||| || |||||||||||||| || ||||||||||||||    
T  44222752 tacctcatcaaatgcttcaaatatgtcaatgctaggttgatggatggtacacacaactgttcttcc 44222817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 548 - 615
Target Start/End: Original strand, 44233574 - 44233641
Alignment:
Q  548 tacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||| ||||| ||||||||||| || || ||||||||||| || ||||||||||||||||    
T  44233574 tacctcatcaaatgcttcaaatatgtcaatgctaggctgatggatggtacacacaactgttcttcctg 44233641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 191 - 293
Target Start/End: Original strand, 44233183 - 44233285
Alignment:
Q  191 aaatcaacacctaaagtatgttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaaccccttcgatgc 290  Q
    |||||||| || ||| || |||||||||| | | ||||||||||||||||||| |||||||| ||||| || ||||| |||||||| || || || ||||    
T  44233183 aaatcaacgcccaaattaagttcttgtgcggtagttgtaacttccaacatccatgttgctgggttatatccgtctttgattttactcactccgtcaatgc 44233282  T
Q  291 tct 293  Q
    |||    
T  44233283 tct 44233285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 1084415 - 1084479
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||    
T  1084415 acctcatcaaaagattcaaatatatcaatacttggttgatggatggtgcaaacaacagttcttcc 1084479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 39573967 - 39574025
Alignment:
Q  211 ttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaa 269  Q
    ||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||    
T  39573967 ttcttttgctgagctagtaacttccaacatccaagttgctggattgtagccatctttaa 39574025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 615
Target Start/End: Original strand, 42141748 - 42141813
Alignment:
Q  550 cctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||| ||||| ||||    
T  42141748 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctg 42141813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 615
Target Start/End: Original strand, 42153550 - 42153615
Alignment:
Q  550 cctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    |||||||||||||||| || ||||| |||||||||||||| || ||||||||||| ||||| ||||    
T  42153550 cctcatcaaaagcttcaaaaatgtctatacttggttgatgaattgtgcaaacaacagttctccctg 42153615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 39588464 - 39588509
Alignment:
Q  230 acttccaacatccaagttgctggattatagccatctttaattttac 275  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||    
T  39588464 acttccaaaatccaagttgctggattatatccatctttaatgttac 39588509  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 39367064 - 39367000
Alignment:
Q  220 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 284  Q
    |||| |||| |||||||||||||| |||||||||||||| || |||||||| || ||||| ||||    
T  39367064 tgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaacacctt 39367000  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 39537613 - 39537677
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| ||||| || ||||| || ||||| |||||||||||||||||    
T  39537613 acctcatcaaaagattcaaatatatcaatgctaggttggtgaatggtacaaacaactgttcttcc 39537677  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 39547078 - 39547142
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| ||||| || || || |||||||| |||||||||||||||||    
T  39547078 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaactgttcttcc 39547142  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 39563358 - 39563426
Alignment:
Q  211 ttcttgtgctgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaac 279  Q
    ||||| || |||| |||| |||||||||||||| |||||||||||||| || |||||||| || |||||    
T  39563358 ttcttttgatgaagttgtgacttccaacatccatgttgctggattataaccgtctttaatcttgctaac 39563426  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 549 - 615
Target Start/End: Complemental strand, 39354086 - 39354020
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    ||||||||||||| ||| ||||| ||||| || || || ||||| || |||||||||||||||||||    
T  39354086 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcctg 39354020  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 1084088 - 1084128
Alignment:
Q  230 acttccaacatccaagttgctggattatagccatctttaat 270  Q
    |||||||||||||| |||||||||||||| || ||||||||    
T  1084088 acttccaacatccatgttgctggattataaccgtctttaat 1084128  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 613
Target Start/End: Complemental strand, 39339243 - 39339179
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| ||||| || || || ||||| || |||||||||||||||||    
T  39339243 acctcatcaaaagattcaaatatatcaatgctaggctggtggattgtacaaacaactgttcttcc 39339179  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 39339620 - 39339556
Alignment:
Q  220 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 284  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||    
T  39339620 tgaatttgtgacttccaacatccatgttgctggattataaccgtctttgatcttgctaacacctt 39339556  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 39354461 - 39354397
Alignment:
Q  220 tgaacttgtaacttccaacatccaagttgctggattatagccatctttaattttactaacccctt 284  Q
    |||| |||| |||||||||||||| |||||||||||||| || ||||| || || ||||| ||||    
T  39354461 tgaagttgtgacttccaacatccatgttgctggattataaccgtctttgatctttctaacacctt 39354397  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 613
Target Start/End: Complemental strand, 39366666 - 39366602
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| ||||| || || || |||||||| |||||||| ||||||||    
T  39366666 acctcatcaaaagattcaaatatatcaatgctaggctggtggatggtacaaacaacagttcttcc 39366602  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 39563709 - 39563773
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||||| ||| ||||| ||||| || || || ||||| || |||||||||||||||||    
T  39563709 acctcatcaaaagattcaaatatatcaatgctaggctggtggatagtacaaacaactgttcttcc 39563773  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 542 - 604
Target Start/End: Original strand, 2160216 - 2160278
Alignment:
Q  542 atttcttacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaac 604  Q
    |||| ||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||    
T  2160216 atttgttacctcatcaaaggcgtcgaatatgtcaatacttggctgatggattgtgcaaacaac 2160278  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 270
Target Start/End: Original strand, 2159897 - 2159941
Alignment:
Q  226 tgtaacttccaacatccaagttgctggattatagccatctttaat 270  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||    
T  2159897 tgtaacttccaacatccatgttgcaggattataaccatctttaat 2159941  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 547 - 615
Target Start/End: Complemental strand, 19543382 - 19543314
Alignment:
Q  547 ttacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcctg 615  Q
    ||||||||||||||  ||| || || ||||||||||||||||| || ||||| ||||| ||||| ||||    
T  19543382 ttacctcatcaaaattttcaaaaatatcaatacttggttgatgaattgtgcacacaacagttctccctg 19543314  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 549 - 613
Target Start/End: Original strand, 25522821 - 25522885
Alignment:
Q  549 acctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    ||||||||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| || ||||||||    
T  25522821 acctcatcaaatgcttcaaatatatcaatacttggctgatgtatggtacaaaccacagttcttcc 25522885  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 4501864 - 4501799
Alignment:
Q  548 tacctcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    |||||||||||| ||||| || || ||||| || |||||||| || ||||| ||||||||||||||    
T  4501864 tacctcatcaaaggcttcaaagatatcaatgctaggttgatgaattgtgcacacaactgttcttcc 4501799  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 613
Target Start/End: Complemental strand, 29777586 - 29777525
Alignment:
Q  552 tcatcaaaagcttcgaatatgtcaatacttggttgatggatggtgcaaacaactgttcttcc 613  Q
    |||||||| ||||| || || ||||||||||||||||| ||||| || ||||| ||||||||    
T  29777586 tcatcaaatgcttcaaaaatatcaatacttggttgatgtatggtacagacaacagttcttcc 29777525  T

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