View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_low_11 (Length: 399)
Name: NF13583_low_11
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 4 - 362
Target Start/End: Complemental strand, 41307068 - 41306710
Alignment:
| Q |
4 |
cataggataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtggaaag |
103 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41307068 |
cataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtgaaaag |
41306969 |
T |
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| Q |
104 |
aagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttttaaatgtaaccctgaaaattaaccat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41306968 |
aagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctcggtgcttttcttccttattactcttttaaatgtaaccctgaaaattaaccat |
41306869 |
T |
|
| Q |
204 |
gaaagacttcaatacttcattttctccaattaagagtggtagatgatgaattgattatgttatgtaacttacattggcgccgcataaagtgagactgaag |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41306868 |
gaaagacttcaatacttcattttctccaattaagagtggtagatgatgaattaattatgttatgtaacttacattggcgccgcataaagtgagactgaag |
41306769 |
T |
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| Q |
304 |
cagcattgcctgcaagaacaccaatgaactaaggtttaagaaactaaggaatgtcattt |
362 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41306768 |
cagcattgcctgcaagaacaccaatgaagtaaggtttaagaaactaaggaatgtcattt |
41306710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 41297206 - 41296882
Alignment:
| Q |
4 |
cataggataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtggaaag |
103 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41297206 |
cataagataactcaagagcaattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtgaaaag |
41297107 |
T |
|
| Q |
104 |
aagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttttaaatgtaaccctgaaaattaaccat |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41297106 |
aagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttttaaatgtaaccctgaaaattaagcat |
41297007 |
T |
|
| Q |
204 |
ga-----aagacttcaatacttcattttctccaattaagagtggtagatgatgaattgattatgttatgtaacttacattggcgccgcataaagtgagac |
298 |
Q |
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| T |
41297006 |
caaaattaaggattcaacacttcattttggtagataatgagtggta-ctaatgaattgattatgatatgttactcacattggcgcagcataaagtgagac |
41296908 |
T |
|
| Q |
299 |
tgaagcagcattgcctgcaagaacac |
324 |
Q |
| |
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||| ||||||||||||| |||||||| |
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| T |
41296907 |
tgaggcagcattgcctgtaagaacac |
41296882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 9612104 - 9612269
Alignment:
| Q |
22 |
caattccaactccattaactgtgacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtggaaagaagacaattcaacaatcc |
121 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| || |||||||| ||| |||| ||||| ||||| | ||| |
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| T |
9612104 |
caattccaactccattaacagtgacaagaggaaaattttcccacttgttacttacaataggcaatccataccaagtgaaaaggagacagttcaatagtcc |
9612203 |
T |
|
| Q |
122 |
aattatgtaaggaatgcatgaaaattcctctgtgcttttcttccttattactcttttaaatgtaac |
187 |
Q |
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|| |||||||||| |||||||||||||| |||||||| |||||||| || ||||| || ||||| |
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| T |
9612204 |
tatagtgtaaggaatacatgaaaattcctcagtgctttttttccttatcacccttttgaaagtaac |
9612269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 321
Target Start/End: Original strand, 9612352 - 9612413
Alignment:
| Q |
260 |
atgttatgtaacttacattggcgccgcataaagtgagactgaagcagcattgcctgcaagaa |
321 |
Q |
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|||||||||||| |||||||| || ||||||||||| ||||| ||| |||| |||||||||| |
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| T |
9612352 |
atgttatgtaacatacattggtgcagcataaagtgacactgatgcaacatttcctgcaagaa |
9612413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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