View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_low_14 (Length: 362)
Name: NF13583_low_14
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 17 - 352
Target Start/End: Complemental strand, 45641368 - 45641033
Alignment:
| Q |
17 |
aggaagtgcatacttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctc |
116 |
Q |
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| T |
45641368 |
aggaagtgcatacttcaatgcttttcatacatcatcaaccgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctc |
45641269 |
T |
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| Q |
117 |
aatccagtaacacttcaagccaatcctcgggaattcccattgaaaaccctttgattattccaagcagccagagctatctatacaacataagaccacaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45641268 |
aatccagtaacacttcaagccaatcctcgggaattccccttgaaaaccctttgattattccaagcagccagagctatctatacaacataagaccacaaac |
45641169 |
T |
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| Q |
217 |
gacttcattaagccgactcatctcagtcctatattgatatcaaacaataaagatatggtgaactttgaaatggaagatgggatcttccatgattaacatt |
316 |
Q |
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| T |
45641168 |
gacttcattaagccgactcatctcaatcctatattgatatcaaacaataaagatatggtgaactttgaaatggaagatgggatcttccatgattaacatt |
45641069 |
T |
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| Q |
317 |
ttgtgaatgctaaagatcgtctttcgtgtgatgatg |
352 |
Q |
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| T |
45641068 |
ttgtgaatgctaaagatcgtcttccgtgtgaagatg |
45641033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 234 - 352
Target Start/End: Complemental strand, 45647579 - 45647461
Alignment:
| Q |
234 |
tcatctcagtcctatattgatatcaaacaataaagatatggtgaactttgaaatggaagatgggatcttccatgattaacattttgtgaatgctaaagat |
333 |
Q |
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| T |
45647579 |
tcatctcagtcctatattggtatcagacaataatgatattgtgaactttgaaatggaagatgggatcttccatgattcagattttgtgaatgctagagac |
45647480 |
T |
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| Q |
334 |
cgtctttcgtgtgatgatg |
352 |
Q |
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| T |
45647479 |
tgtctttcgtgtgaagatg |
45647461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 28 - 213
Target Start/End: Complemental strand, 45647823 - 45647643
Alignment:
| Q |
28 |
acttcaatgcttttcatacatcatcaatcgtttaaggattatcaggaatttcagactcttgcgccctctctcgtgtcatctcaaatctcaatccagtaac |
127 |
Q |
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||||||||| ||||||||| || ||| | || |||||||||||||||||||||||||||| || ||||||| | || ||||||||||| |||| |
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| T |
45647823 |
acttcaatgtttttcataccgcaccaagcattcaaggattatcaggaatttcagactcttgtgctctctctctt-----ctgtcatctcaatccaataac |
45647729 |
T |
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| Q |
128 |
acttcaagccaatcctcgggaattcccattgaaaaccctttgattattccaagcagccagagctatctatacaacataagaccaca |
213 |
Q |
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||||||||||| ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||| || | |||| ||||||| |||| |
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| T |
45647728 |
acttcaagccagtcctcggaaattccctttgataaccctttggttattccaagcagccatagccatgtctacagcataagatcaca |
45647643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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