View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13583_low_23 (Length: 219)

Name: NF13583_low_23
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13583_low_23
NF13583_low_23
[»] chr6 (1 HSPs)
chr6 (33-200)||(24589660-24589820)
[»] chr1 (3 HSPs)
chr1 (73-151)||(11749638-11749716)
chr1 (78-150)||(2071570-2071642)
chr1 (78-150)||(2075100-2075172)
[»] chr4 (1 HSPs)
chr4 (73-112)||(11096828-11096867)
[»] chr8 (1 HSPs)
chr8 (122-150)||(24726674-24726702)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 24589660 - 24589820
Alignment:
Q  33 ctaggattttttagaatatcaatagcttaacataatgtattatagaaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaa 132  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||       |||||    
T  24589660 ctaggatttcttagaatatcaatagcttaacattatgtactatagaaaacctaatgtactattaacttagtaatataaatgccgatta-------accaa 24589752  T
Q  133 tattttactatctaacacaaattaattttgaattatatttaatcgtagtcaagattaagagaaaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24589753 tattttactatctaacacaaattaattttgaattatatttaattgtagtcaagattaagaaaaaatgt 24589820  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 11749638 - 11749716
Alignment:
Q  73 tatagaaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacaca 151  Q
    |||| |||||||| || |||||||||||||||||||||| | || ||| |||||| | ||||||||| | |||||||||    
T  11749638 tatataaaacctattgaactattaacttagtaatataaaggtcggttatcttaagtcaaatattttattttctaacaca 11749716  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 2071570 - 2071642
Alignment:
Q  78 aaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacac 150  Q
    ||||||||||| |||  ||||||| |||||| || ||| | ||||||||| ||||||||||| ||||||||||    
T  2071570 aaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2071642  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 150
Target Start/End: Original strand, 2075100 - 2075172
Alignment:
Q  78 aaaacctaatgcactattaacttagtaatataaatgccgattagcttaagaccaatattttactatctaacac 150  Q
    ||||||||||| |||  ||||||| |||||| || ||| | ||||||||| ||||||||||| ||||||||||    
T  2075100 aaaacctaatggactgctaacttactaatattaaggcccaatagcttaagcccaatattttattatctaacac 2075172  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 11096867 - 11096828
Alignment:
Q  73 tatagaaaacctaatgcactattaacttagtaatataaat 112  Q
    ||||||||| |||||| |||||||||||||||||||||||    
T  11096867 tatagaaaatctaatggactattaacttagtaatataaat 11096828  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 24726702 - 24726674
Alignment:
Q  122 cttaagaccaatattttactatctaacac 150  Q
    |||||||||||||||||||||||||||||    
T  24726702 cttaagaccaatattttactatctaacac 24726674  T

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