View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_low_4 (Length: 561)
Name: NF13583_low_4
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 544
Target Start/End: Original strand, 48798206 - 48798726
Alignment:
| Q |
22 |
cttgccactggagccc-agcaacttggttattgagttcttcgttttcagctgttannnnnnnctcttctgctattcaatatcattgcctgcttagttctt |
120 |
Q |
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| T |
48798206 |
cttgccactggagccccaacaacttggttattgagttcttcgttttcggctgttatttttttctcttccgctattcaatatcattgcctgcttagttctt |
48798305 |
T |
|
| Q |
121 |
ggcaacaatcctaaatgacactcattttaatttgggtttattcacatttggatataatactgtagcatcgtttggtttatactttaatcttatacaataa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798306 |
ggcaacaatcctaaatgacactcattttaatttgggtttattcacatttggatataatactgtagcatcgtttggtttatactttaatcttatacaataa |
48798405 |
T |
|
| Q |
221 |
gacgcggctttt-----tgttctatcgtttgtatgcttgagatttgtactttaacccctaagtctatgaagttaatctatgatgccagactgccagttag |
315 |
Q |
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|||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
48798406 |
gacgcggcttttgtttttgttgtatcgtttgtatgcttgagatttgtactttaacccctaagtctatgaagttaatctatgatgcc--------agttag |
48798497 |
T |
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| Q |
316 |
gctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgttgaaataagattctagttaggaagctaagtattgtttga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798498 |
gctttgcaagaaaagctatgatgctagttaggcttcggggaaggtggaactaaagtattgttgaaataagattctagttaggaagctaagtattgtttga |
48798597 |
T |
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| Q |
416 |
cttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagtttcgataagatgtgagcaaaacaccaaggatgggaacggt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48798598 |
cttgtctatagtgatccggagcaatcataaaaggaagttagcatgcaaagcaatgccagtttcgataagatgtgagcaaaacaccaaggatgggaatggt |
48798697 |
T |
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| Q |
516 |
ttggatgtatggcttggccgggtagccat |
544 |
Q |
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| T |
48798698 |
ttggatgtatggcttggccgggtagccat |
48798726 |
T |
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