View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13583_low_7 (Length: 461)
Name: NF13583_low_7
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 84 - 332
Target Start/End: Complemental strand, 30078609 - 30078359
Alignment:
| Q |
84 |
ttgactacttgtattgactctaaattccctaccaaactcaagatgggaaaagttgaaaacaaaacaaaattccaactcattcttnnnnnnnnnnnnccac |
183 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30078609 |
ttgactacttgtattgactctaaattctctaccaaactcaagatggggaaagttgaaaacaaaacaaaattccaactcattctttctctctctctcccac |
30078510 |
T |
|
| Q |
184 |
aaaatttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30078509 |
aaaatttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccaccct |
30078410 |
T |
|
| Q |
284 |
ttacccct--nnnnnnnnntgccatcctaacccccctaagtttctccctca |
332 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30078409 |
ttacccctaaaaaaaaaaatgccatcctaacccccctaagtttctccctca |
30078359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University