View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13583_low_9 (Length: 420)
Name: NF13583_low_9
Description: NF13583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13583_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 7e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 208 - 384
Target Start/End: Original strand, 8604412 - 8604588
Alignment:
| Q |
208 |
gcatccacctccgcctcgatctagacctcaacctctccccaagtccttcattggaaagaatttccaatggtcaacgaaacaccatcttctactactaacc |
307 |
Q |
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| T |
8604412 |
gcatccacctccgcctcgatctagacttcaacctctccccaagtccttcattggaaagaatttccaatggtcaacgaaacaccatcttctactactaacc |
8604511 |
T |
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| Q |
308 |
atgttcgtgaagagagtaatgggaacaaaatccctttacgaccagaaggtgatgggtgagtccttctaacgtgatga |
384 |
Q |
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| T |
8604512 |
atgttcgtgaagagagtaatgggaacaaaatccctttacgaccagaaggtgatgggtgagtccttctaacgtgatga |
8604588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 25 - 144
Target Start/End: Original strand, 8604184 - 8604303
Alignment:
| Q |
25 |
tcgacgaatactccaacctttctgcctctattttcggcactcttttctcttctttcacaactcttttagtgttagtcccacgaggtatggacctcaaccc |
124 |
Q |
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| T |
8604184 |
tcgacgaatactccaacctttctgcctctattttcggcactcttttctcttctttcacaaatcttttagtgttagtcccacgaggtatggacctcaaccc |
8604283 |
T |
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| Q |
125 |
aacaaacctcttacacgagt |
144 |
Q |
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| T |
8604284 |
aacaaacctcttacacgagt |
8604303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 372
Target Start/End: Original strand, 8574089 - 8574216
Alignment:
| Q |
245 |
cccaagtccttcattggaaagaatttccaatggtcaacgaaacaccatcttctactactaaccatgttcgtgaagagagtaatgggaacaaaatcccttt |
344 |
Q |
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| T |
8574089 |
cccaagaccttgaatggcaagactttgcaatgatcaacgaaactccatcttctactactagccatagtagtgaagaaagtagtggtaacaggattcctat |
8574188 |
T |
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| Q |
345 |
acgaccagaaggtgatgggtgagtcctt |
372 |
Q |
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| T |
8574189 |
acttccagaagctgatgggtaagtcctt |
8574216 |
T |
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