View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_high_8 (Length: 280)
Name: NF13584_high_8
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_high_8 |
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| [»] scaffold0578 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 4611040 - 4611273
Alignment:
| Q |
10 |
catcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtatatgcaattgaataattatatgtcaagcataaaaaat |
109 |
Q |
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| T |
4611040 |
catcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtatatgcaattgattaattatatgtcaagcataaaaaat |
4611139 |
T |
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| Q |
110 |
ttcatagagttaaattttgcaacttcagtctatactcaannnnnnnaattgatttgctactcattccgtcctttaataaatgatcattttgtaaaaaatt |
209 |
Q |
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| T |
4611140 |
ttcatagagttaaattttgcaacttcaatctatactcattttttttaattgttttactactcattctgtactttaataagtgatcattttgtaaaaaatt |
4611239 |
T |
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| Q |
210 |
attgttttaaaataacttatccatttcacttttt |
243 |
Q |
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| T |
4611240 |
attgttttaaaataacttatccattttacttttt |
4611273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 4515747 - 4515685
Alignment:
| Q |
11 |
atcatcagcaagagttcctaaatttaagttgtgattctggcaaatcttaaatggtttaagtat |
73 |
Q |
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| T |
4515747 |
atcatcagctggagttcctaaactgaagttgtgattctggctaatcttaaatgttttgagtat |
4515685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 4611293 - 4611335
Alignment:
| Q |
239 |
tttttcaattcaatatatttc-aatttattatatttatgctaa |
280 |
Q |
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| T |
4611293 |
tttttcaattcaatttatttccaatttattatatttatgctaa |
4611335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 13500909 - 13500862
Alignment:
| Q |
196 |
ttttgtaaaaaattattgttttaaaataacttatccatttcacttttt |
243 |
Q |
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| T |
13500909 |
ttttgtaaaaaaatattgtcctaaaataacttatccatttcacttttt |
13500862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 49448763 - 49448809
Alignment:
| Q |
196 |
ttttgtaaaaaattattgttttaaaataacttatccatttcactttt |
242 |
Q |
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| T |
49448763 |
ttttgtaaaaaattattttcttaaaataactgatccatttcactttt |
49448809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 44022085 - 44022018
Alignment:
| Q |
174 |
tccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatttcactttt |
242 |
Q |
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| T |
44022085 |
tccgtcccttcataattgatcattttgtaaaaaa-tattgtcttaaaataattgatccatttcaatttt |
44022018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 243
Target Start/End: Original strand, 12678268 - 12678345
Alignment:
| Q |
167 |
tactcattccgtcctttaataaatgatcattttgtaaaaaat-tattgttttaaaataacttatccatttcacttttt |
243 |
Q |
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| T |
12678268 |
tactcaatccgtcctttaataagtgattgttttgttaaaaatatattgtcctaaaataactgatctatttcacttttt |
12678345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 31956640 - 31956700
Alignment:
| Q |
183 |
taataaatgatcattttgtaaaaaattattgttttaaaataacttatccatttcacttttt |
243 |
Q |
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| T |
31956640 |
taataagtgatctttttgtcaaaaaatattgttctaaaataattgatctatttcacttttt |
31956700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0578 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0578
Description:
Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Original strand, 3919 - 3992
Alignment:
| Q |
161 |
atttgctactcattccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatt |
234 |
Q |
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| T |
3919 |
atttgttactccctccgtcctataataagtgatcattttgtaaaaaaatattatcctaaaataaccgatccatt |
3992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 5007759 - 5007686
Alignment:
| Q |
161 |
atttgctactcattccgtcctttaataaatgatcattttgtaaaaaattattgttttaaaataacttatccatt |
234 |
Q |
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| T |
5007759 |
atttgttactccctccgtcctataataagtgatcattttgtaaaaaaatattatcctaaaataaccgatccatt |
5007686 |
T |
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