View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13584_low_10 (Length: 268)
Name: NF13584_low_10
Description: NF13584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13584_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 30864448 - 30864193
Alignment:
| Q |
1 |
ttactctccggtttccctccattttcctcgaaagcagccctaagacgtccgatgagagcgtcaagacttccccacgcttgcttaagaggacaagcgcaag |
100 |
Q |
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| T |
30864448 |
ttactctccggtttccctccattttcctcgaaagcagccctaagacgtccgatgagagcgtcaagacttccccacgcttgcttaagaggacaagcgcaag |
30864349 |
T |
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| Q |
101 |
gagaaggagggttaggttgtccgaaatactgacaacctatcatgtgcaccttagtttttccaaattgatcaagatacttgagaaactctatcacatgtgc |
200 |
Q |
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| T |
30864348 |
gagaaggtgggttaggttgtccgaaatacggacaacctatcacgtgcaccttagtttttccaaattgatcaagatacttgagaaactcaatcacatgtgc |
30864249 |
T |
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| Q |
201 |
tccactgcatagtgctagggttaatggtggtttgtggttacgtagatattcttgga |
256 |
Q |
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| T |
30864248 |
tccactgcatagtgctagggttaatggtggtttgtggttacgtagatattgttgga |
30864193 |
T |
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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 35814724 - 35814648
Alignment:
| Q |
46 |
cgtccgatgagagcgtcaagacttccccacgcttgcttaagaggacaagcgcaaggagaaggagggttaggttgtcc |
122 |
Q |
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| T |
35814724 |
cgtccgatgagtgcatcaagacttccccaagcttgcttgagaggacaagcacaaggtgcaggtggggtaggttgtcc |
35814648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 151 - 239
Target Start/End: Complemental strand, 26585140 - 26585052
Alignment:
| Q |
151 |
ttagtttttccaaattgatcaagatacttgagaaactctatcacatgtgctccactgcatagtgctagggttaatggtggtttgtggtt |
239 |
Q |
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| T |
26585140 |
ttagtcttcccaaattgatcaagatattttaaaaactcgatcacgtgtgctccactgcatcgtacaagtgtcaatggtggcttgtggtt |
26585052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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